Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01039
         (746 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061579-1|AAL29127.1|  613|Drosophila melanogaster SD02991p pro...    30   2.9  
AF247763-1|AAF74194.1|  613|Drosophila melanogaster SCAR protein.      30   2.9  
AE014134-2001|AAF53042.1|  613|Drosophila melanogaster CG4636-PA...    30   2.9  
BT029033-1|ABJ16966.1|  485|Drosophila melanogaster IP02838p pro...    29   5.1  
AY672641-1|AAV91002.1|  485|Drosophila melanogaster histamine-ga...    29   5.1  
AY672640-1|AAV91001.1|  485|Drosophila melanogaster histamine-ga...    29   5.1  
AY672639-1|AAV91000.1|  485|Drosophila melanogaster histamine-ga...    29   5.1  
AY049774-1|AAL12210.1|  485|Drosophila melanogaster histamine-ga...    29   5.1  
AF435469-1|AAL74413.1|  485|Drosophila melanogaster histamine-ga...    29   5.1  
AF411340-1|AAL05873.1|  485|Drosophila melanogaster histamine-ga...    29   5.1  
AF382403-1|AAL66188.1|  485|Drosophila melanogaster histamine-ga...    29   5.1  
AE014297-2697|AAF55691.1|  485|Drosophila melanogaster CG7411-PA...    29   5.1  

>AY061579-1|AAL29127.1|  613|Drosophila melanogaster SD02991p
           protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 298 YDPRSPRPQSLR*NRPYTSETI 363
           YD R PRP S+  NR Y SE I
Sbjct: 253 YDTRPPRPNSIELNRSYQSEQI 274


>AF247763-1|AAF74194.1|  613|Drosophila melanogaster SCAR protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 298 YDPRSPRPQSLR*NRPYTSETI 363
           YD R PRP S+  NR Y SE I
Sbjct: 253 YDTRPPRPNSIELNRSYQSEQI 274


>AE014134-2001|AAF53042.1|  613|Drosophila melanogaster CG4636-PA
           protein.
          Length = 613

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 298 YDPRSPRPQSLR*NRPYTSETI 363
           YD R PRP S+  NR Y SE I
Sbjct: 253 YDTRPPRPNSIELNRSYQSEQI 274


>BT029033-1|ABJ16966.1|  485|Drosophila melanogaster IP02838p
           protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 735 MTIKT-YQYLFSDHNIMYYVKFDLRIMCI 652
           MTI   Y +L+ D  I+Y VK  L++ CI
Sbjct: 128 MTIPNHYMWLYKDKTILYMVKLTLKLSCI 156


>AY672641-1|AAV91002.1|  485|Drosophila melanogaster histamine-gated
           chloride channelsubunit protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 735 MTIKT-YQYLFSDHNIMYYVKFDLRIMCI 652
           MTI   Y +L+ D  I+Y VK  L++ CI
Sbjct: 128 MTIPNHYMWLYKDKTILYMVKLTLKLSCI 156


>AY672640-1|AAV91001.1|  485|Drosophila melanogaster histamine-gated
           chloride channelsubunit protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 735 MTIKT-YQYLFSDHNIMYYVKFDLRIMCI 652
           MTI   Y +L+ D  I+Y VK  L++ CI
Sbjct: 128 MTIPNHYMWLYKDKTILYMVKLTLKLSCI 156


>AY672639-1|AAV91000.1|  485|Drosophila melanogaster histamine-gated
           chloride channelsubunit protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 735 MTIKT-YQYLFSDHNIMYYVKFDLRIMCI 652
           MTI   Y +L+ D  I+Y VK  L++ CI
Sbjct: 128 MTIPNHYMWLYKDKTILYMVKLTLKLSCI 156


>AY049774-1|AAL12210.1|  485|Drosophila melanogaster histamine-gated
           chloride channelsubunit A protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 735 MTIKT-YQYLFSDHNIMYYVKFDLRIMCI 652
           MTI   Y +L+ D  I+Y VK  L++ CI
Sbjct: 128 MTIPNHYMWLYKDKTILYMVKLTLKLSCI 156


>AF435469-1|AAL74413.1|  485|Drosophila melanogaster histamine-gated
           chloride channelalpha1 subunit protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 735 MTIKT-YQYLFSDHNIMYYVKFDLRIMCI 652
           MTI   Y +L+ D  I+Y VK  L++ CI
Sbjct: 128 MTIPNHYMWLYKDKTILYMVKLTLKLSCI 156


>AF411340-1|AAL05873.1|  485|Drosophila melanogaster histamine-gated
           chloride channelsubunit 1 protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 735 MTIKT-YQYLFSDHNIMYYVKFDLRIMCI 652
           MTI   Y +L+ D  I+Y VK  L++ CI
Sbjct: 128 MTIPNHYMWLYKDKTILYMVKLTLKLSCI 156


>AF382403-1|AAL66188.1|  485|Drosophila melanogaster histamine-gated
           chloride channelsubunit 2 protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 735 MTIKT-YQYLFSDHNIMYYVKFDLRIMCI 652
           MTI   Y +L+ D  I+Y VK  L++ CI
Sbjct: 128 MTIPNHYMWLYKDKTILYMVKLTLKLSCI 156


>AE014297-2697|AAF55691.1|  485|Drosophila melanogaster CG7411-PA
           protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 735 MTIKT-YQYLFSDHNIMYYVKFDLRIMCI 652
           MTI   Y +L+ D  I+Y VK  L++ CI
Sbjct: 128 MTIPNHYMWLYKDKTILYMVKLTLKLSCI 156


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,733,188
Number of Sequences: 53049
Number of extensions: 571681
Number of successful extensions: 1556
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)