Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01038X
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    52   2e-08
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    30   0.15 
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    28   0.46 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   0.46 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   0.81 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   0.81 
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   3.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   5.7  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   5.7  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    24   7.6  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 52.4 bits (120), Expect = 2e-08
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +2

Query: 257 HFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC 400
           H AR+C +    CY CN TGH A E  +   E +CY C   GH+ R+C
Sbjct: 27  HQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDC 73



 Score = 51.6 bits (118), Expect = 4e-08
 Identities = 23/48 (47%), Positives = 27/48 (56%)
 Frame = +2

Query: 257 HFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC 400
           H ARDC     +CY C   GH + E  Q+ D   CY CN+ GHIA NC
Sbjct: 126 HQARDCTMGV-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172



 Score = 48.4 bits (110), Expect = 4e-07
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +2

Query: 257 HFARDCKE--EADRCYRCNGTGHIAREFAQSPDE---PSCYNCNKTGHIARNC 400
           H A +C E  +   CY C   GH+ R+   SP+      CY C + GHIAR+C
Sbjct: 46  HKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98



 Score = 44.4 bits (100), Expect = 7e-06
 Identities = 19/37 (51%), Positives = 21/37 (56%)
 Frame = +2

Query: 290 RCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC 400
           RCY C   GH ARE  +      CYNCN+TGH A  C
Sbjct: 18  RCYNCGENGHQARECTKGS---ICYNCNQTGHKASEC 51



 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 108 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKC 245
           S P     + CYKC R GH AR+C   G  S    G +R    C+ C
Sbjct: 75  SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYAC 121



 Score = 37.1 bits (82), Expect = 0.001
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 16/64 (25%)
 Frame = +2

Query: 257 HFARDCKEEAD-----RCYRCNGTGHIARE-----------FAQSPDEPSCYNCNKTGHI 388
           H  RDC    +      CY+C   GHIAR+           F       +CY C   GH 
Sbjct: 68  HLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQ 127

Query: 389 ARNC 400
           AR+C
Sbjct: 128 ARDC 131



 Score = 36.3 bits (80), Expect = 0.002
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 15/55 (27%)
 Frame = +3

Query: 132 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFKCNR 251
           S+CY CN+TGH A ECT+             G + RD   S   RQ  +C+KC R
Sbjct: 36  SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGR 90



 Score = 34.3 bits (75), Expect = 0.007
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 138 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKC 236
           CY C   GH ARECT+G +    +    +  +C
Sbjct: 19  CYNCGENGHQARECTKGSICYNCNQTGHKASEC 51



 Score = 33.5 bits (73), Expect = 0.012
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 293 CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC 400
           CY C   GH AR+         CY+C K GH +  C
Sbjct: 118 CYACGSYGHQARDCTMG---VKCYSCGKIGHRSFEC 150



 Score = 31.9 bits (69), Expect = 0.038
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 120 AMSSSVCYKCNRTGHFARECT 182
           A    +CYKCN+ GH A  CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173



 Score = 31.1 bits (67), Expect = 0.066
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 353 PSCYNCNKTGHIARNC 400
           P CYNC + GH AR C
Sbjct: 17  PRCYNCGENGHQAREC 32



 Score = 30.7 bits (66), Expect = 0.087
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
 Frame = +3

Query: 126 SSSVCYKCNRTGHFARECTQG------GVVSRDSGFNRQR----EKCFKCNR 251
           S+  CY C   GH AR+CT G      G +   S F  Q+    + C+KCN+
Sbjct: 114 SNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRS-FECQQASDGQLCYKCNQ 164



 Score = 29.1 bits (62), Expect = 0.27
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 251 HRHFARDCKEEADRCYRCNGTGHIA 325
           HR F      +   CY+CN  GHIA
Sbjct: 145 HRSFECQQASDGQLCYKCNQPGHIA 169


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 16/73 (21%)
 Frame = +2

Query: 230 EVLQVQPHRHFARDCKEEADRCYRCNGTGHIAREF----------------AQSPDEPSC 361
           E   V   R+F  D   E+  C+ C G GHI+++                  + P    C
Sbjct: 69  EWADVSRGRYFGSD-PSESIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKC 127

Query: 362 YNCNKTGHIARNC 400
            NC   GHIA  C
Sbjct: 128 MNCGLLGHIAARC 140



 Score = 25.0 bits (52), Expect = 4.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 129 SSVCYKCNRTGHFAREC 179
           S VC+ C   GH +++C
Sbjct: 86  SIVCHNCKGNGHISKDC 102


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +2

Query: 290 RCYRCNGTGHIAREFAQSPD--EPS---CYNCNKTGHIARNC 400
           +C+ C+  GH++ +  Q+P    P    C  C+   H+A++C
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166



 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 132 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTDTLRG 269
           S+C++C    H    C++ G +        +  KCF C+    L G
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSG 137



 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 108 SKPIAMSSSVCYKCNRTGHFARECTQ 185
           SK   +  + C+ C+  GH + +C Q
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ 141


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +2

Query: 278 EEADRCYRCNGTGHIAREFAQSPDEPS---CYNCNKTGHIARNC 400
           +E   C  C   GH   +  +  +      C +C   GHIAR+C
Sbjct: 306 DENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC 349



 Score = 25.0 bits (52), Expect = 4.3
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
 Frame = +2

Query: 251 HRHFARDCKEEADR-----CYRCNGTGHIAREFAQSPDEP 355
           HR F  DC E  +      C  C   GHIAR+      +P
Sbjct: 319 HRRF--DCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356



 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 135 VCYKCNRTGHFAREC 179
           VC  C   GH AR+C
Sbjct: 335 VCRHCGSIGHIARDC 349


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 132  SVCYKCNRTGHFAREC 179
            S CYKC +  H  REC
Sbjct: 1804 STCYKCGKADHNLREC 1819


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 132  SVCYKCNRTGHFAREC 179
            S CYKC +  H  REC
Sbjct: 1804 STCYKCGKADHNLREC 1819


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 135 VCYKCNRTGHFAREC 179
           +CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 77  LH*CLKCSRIFKTDRN 124
           LH C+ C  IF  DRN
Sbjct: 425 LHWCINCRSIFSGDRN 440


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 177 IRARNARSGCTCSKRLNSLRSVLKILEHLRH*CNDRSTINYPMNLQI 37
           +R+R   S     KR + L+ V   LEHL+H   +  ++N  + ++I
Sbjct: 411 LRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRI 457


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 308 GTGHIAREFAQSPD-EPSCYNCNKTGH 385
           G G+    F  SP   PS YN N+TG+
Sbjct: 461 GFGYQQPSFPYSPGFPPSAYNQNRTGY 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,381
Number of Sequences: 5004
Number of extensions: 25511
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)