Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS01038X
(400 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 50 5e-07
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 37 0.005
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 37 0.005
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 37 0.005
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 37 0.005
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 37 0.005
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 37 0.005
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 36 0.008
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 36 0.008
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 32 0.13
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 32 0.13
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 32 0.13
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.17
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 32 0.17
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 31 0.40
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 31 0.40
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 30 0.70
U50310-1|AAA92538.1| 317|Caenorhabditis elegans Hypothetical pr... 29 0.93
U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 29 1.6
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 28 2.1
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical pr... 27 5.0
U97193-4|AAB52439.1| 691|Caenorhabditis elegans Hypothetical pr... 27 6.5
U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical pr... 27 6.5
AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in ... 27 6.5
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 26 8.7
U97401-1|AAB52466.2| 336|Caenorhabditis elegans Hypothetical pr... 26 8.7
AL117206-4|CAB60447.1| 447|Caenorhabditis elegans Hypothetical ... 26 8.7
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 26 8.7
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 26 8.7
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 50.4 bits (115), Expect = 5e-07
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = +2
Query: 290 RCYRCNGTGHIAREFAQS--PDEPSCYNCNKTGHIARNC 400
+CY C +GHI+RE +S +E CY C +TGHI+R+C
Sbjct: 108 KCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDC 146
Score = 40.7 bits (91), Expect = 4e-04
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 132 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 245
S CY C TGHF+R+C +GG G C+ C
Sbjct: 35 STCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNC 72
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Frame = +2
Query: 284 ADR-CYRCNGTGHIAREFAQSPDE---------PSCYNCNKTGHIARNC 400
+DR CY+C GHI+R + +CYNC +TGH +R+C
Sbjct: 2 SDRNCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDC 50
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRT 254
CY C R+GH +RECT+ G + + ++C++C T
Sbjct: 109 CYNCGRSGHISRECTESG--------SAEEKRCYQCQET 139
Score = 35.1 bits (77), Expect = 0.019
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 185 GGRGVAGFRFQSAT*EVLQVQPHRHFARDCKE----EADRCYRCNGTGHIARE 331
GGRG G F + H +R+C E E RCY+C TGHI+R+
Sbjct: 95 GGRGGEGRSFGGQ--KCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRD 145
Score = 33.9 bits (74), Expect = 0.043
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Frame = +2
Query: 293 CYRCNGTGHIAREFAQSPDEP----------SCYNCNKTGHIARNC 400
CY C TGH +R+ + SCYNC GH +R+C
Sbjct: 37 CYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDC 82
Score = 32.7 bits (71), Expect = 0.100
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +3
Query: 123 MSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRT 254
MS CYKC + GH +R C G G C+ C T
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNGESDGGRRG-GGGGSTCYNCQET 43
Score = 29.9 bits (64), Expect = 0.70
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Frame = +3
Query: 138 CYKCNRTGHFARECT-------QGGVVSR-DSGFNRQREKCFKCNRT 254
CY C GH++R+C GG R G + +KC+ C R+
Sbjct: 69 CYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRS 115
Score = 29.1 bits (62), Expect = 1.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 138 CYKCNRTGHFAREC 179
CY+C TGH +R+C
Sbjct: 133 CYQCQETGHISRDC 146
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 37.1 bits (82), Expect = 0.005
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 290 RCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC 400
+C+ C G GH + E + P C+NC + GH + C
Sbjct: 243 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNEC 277
Score = 35.1 bits (77), Expect = 0.019
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 278 EEADRCYRCNGTGHIAREFAQSPDEPS---CYNCNKTGHIARNC 400
E + C+ C GH + + + E CYNC + GH +R C
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSREC 198
Score = 31.5 bits (68), Expect = 0.23
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 135 VCYKCNRTGHFARECTQ 185
VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 37.1 bits (82), Expect = 0.005
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 290 RCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC 400
+C+ C G GH + E + P C+NC + GH + C
Sbjct: 454 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNEC 488
Score = 36.3 bits (80), Expect = 0.008
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 266 RDCKEEADRCYRCNGTGHIAREFAQSPDEPS---CYNCNKTGHIARNC 400
+D E + C+ C GH + + + E CYNC + GH +R+C
Sbjct: 250 QDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
Score = 36.3 bits (80), Expect = 0.008
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 266 RDCKEEADRCYRCNGTGHIAREFAQSPDEPS---CYNCNKTGHIARNC 400
+D E + C+ C GH + + + E CYNC + GH +R+C
Sbjct: 364 QDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
Score = 27.5 bits (58), Expect = 3.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 135 VCYKCNRTGHFARECTQ 185
VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299
Score = 27.5 bits (58), Expect = 3.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 135 VCYKCNRTGHFARECTQ 185
VCY C + GH +R+C +
Sbjct: 397 VCYNCQQPGHNSRDCPE 413
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 37.1 bits (82), Expect = 0.005
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 290 RCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC 400
+C+ C G GH + E + P C+NC + GH + C
Sbjct: 454 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNEC 488
Score = 36.3 bits (80), Expect = 0.008
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 266 RDCKEEADRCYRCNGTGHIAREFAQSPDEPS---CYNCNKTGHIARNC 400
+D E + C+ C GH + + + E CYNC + GH +R+C
Sbjct: 250 QDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
Score = 36.3 bits (80), Expect = 0.008
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 266 RDCKEEADRCYRCNGTGHIAREFAQSPDEPS---CYNCNKTGHIARNC 400
+D E + C+ C GH + + + E CYNC + GH +R+C
Sbjct: 364 QDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
Score = 27.5 bits (58), Expect = 3.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 135 VCYKCNRTGHFARECTQ 185
VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299
Score = 27.5 bits (58), Expect = 3.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 135 VCYKCNRTGHFARECTQ 185
VCY C + GH +R+C +
Sbjct: 397 VCYNCQQPGHNSRDCPE 413
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 37.1 bits (82), Expect = 0.005
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 290 RCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC 400
+C+ C G GH + E + P C+NC + GH + C
Sbjct: 243 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNEC 277
Score = 35.1 bits (77), Expect = 0.019
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 278 EEADRCYRCNGTGHIAREFAQSPDEPS---CYNCNKTGHIARNC 400
E + C+ C GH + + + E CYNC + GH +R C
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSREC 198
Score = 31.5 bits (68), Expect = 0.23
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 135 VCYKCNRTGHFARECTQ 185
VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 37.1 bits (82), Expect = 0.005
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 290 RCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC 400
+C+ C G GH + E + P C+NC + GH + C
Sbjct: 243 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNEC 277
Score = 35.1 bits (77), Expect = 0.019
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 278 EEADRCYRCNGTGHIAREFAQSPDEPS---CYNCNKTGHIARNC 400
E + C+ C GH + + + E CYNC + GH +R C
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSREC 198
Score = 31.5 bits (68), Expect = 0.23
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 135 VCYKCNRTGHFARECTQ 185
VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 37.1 bits (82), Expect = 0.005
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 290 RCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC 400
+C+ C G GH + E + P C+NC + GH + C
Sbjct: 454 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNEC 488
Score = 36.3 bits (80), Expect = 0.008
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 266 RDCKEEADRCYRCNGTGHIAREFAQSPDEPS---CYNCNKTGHIARNC 400
+D E + C+ C GH + + + E CYNC + GH +R+C
Sbjct: 250 QDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
Score = 36.3 bits (80), Expect = 0.008
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 266 RDCKEEADRCYRCNGTGHIAREFAQSPDEPS---CYNCNKTGHIARNC 400
+D E + C+ C GH + + + E CYNC + GH +R+C
Sbjct: 364 QDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
Score = 27.5 bits (58), Expect = 3.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 135 VCYKCNRTGHFARECTQ 185
VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299
Score = 27.5 bits (58), Expect = 3.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 135 VCYKCNRTGHFARECTQ 185
VCY C + GH +R+C +
Sbjct: 397 VCYNCQQPGHNSRDCPE 413
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 36.3 bits (80), Expect = 0.008
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +2
Query: 257 HFARDCKEEA---DRCYRCNGTGHIAREFAQSPDEPS--CYNCNKTGHIARNC 400
HFA DC + C C GH A + Q P P C NC + GH A++C
Sbjct: 603 HFASDCDQPRVPRGPCRNCGIEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDC 654
Score = 35.9 bits (79), Expect = 0.011
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 269 DCKEEADRCYRCNGTGHIAREFAQSPDEPS--CYNCNKTGHIARNC 400
D E C+ C GHI++E P P C NC + GH A +C
Sbjct: 564 DGGERPRGCHNCGEEGHISKE-CDKPKVPRFPCRNCEQLGHFASDC 608
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 36.3 bits (80), Expect = 0.008
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +2
Query: 257 HFARDCKEEA---DRCYRCNGTGHIAREFAQSPDEPS--CYNCNKTGHIARNC 400
HFA DC + C C GH A + Q P P C NC + GH A++C
Sbjct: 603 HFASDCDQPRVPRGPCRNCGIEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDC 654
Score = 35.9 bits (79), Expect = 0.011
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 269 DCKEEADRCYRCNGTGHIAREFAQSPDEPS--CYNCNKTGHIARNC 400
D E C+ C GHI++E P P C NC + GH A +C
Sbjct: 564 DGGERPRGCHNCGEEGHISKE-CDKPKVPRFPCRNCEQLGHFASDC 608
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 32.3 bits (70), Expect = 0.13
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 284 ADRCYRCNGTG-HIAREFAQSPDEPSCYNCNKTGHIARNC 400
+ +C C +G H+A F +C+ CN+ GHIA NC
Sbjct: 653 SQKCDECQQSGWHMASCFKLK--NRACFRCNEMGHIAWNC 690
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 257 HFARDCKEEADRCYRCNGTGHIA 325
H A K + C+RCN GHIA
Sbjct: 665 HMASCFKLKNRACFRCNEMGHIA 687
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 32.3 bits (70), Expect = 0.13
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 284 ADRCYRCNGTG-HIAREFAQSPDEPSCYNCNKTGHIARNC 400
+ +C C +G H+A F +C+ CN+ GHIA NC
Sbjct: 556 SQKCDECQQSGWHMASCFKLK--NRACFRCNEMGHIAWNC 593
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 257 HFARDCKEEADRCYRCNGTGHIA 325
H A K + C+RCN GHIA
Sbjct: 568 HMASCFKLKNRACFRCNEMGHIA 590
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 32.3 bits (70), Expect = 0.13
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 284 ADRCYRCNGTG-HIAREFAQSPDEPSCYNCNKTGHIARNC 400
+ +C C +G H+A F +C+ CN+ GHIA NC
Sbjct: 567 SQKCDECQQSGWHMASCFKLK--NRACFRCNEMGHIAWNC 604
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 257 HFARDCKEEADRCYRCNGTGHIA 325
H A K + C+RCN GHIA
Sbjct: 579 HMASCFKLKNRACFRCNEMGHIA 601
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 31.9 bits (69), Expect = 0.17
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 123 MSSSVCYKCNRTGHFARECTQGGV 194
+S CYKC GH+A C +G +
Sbjct: 247 LSDVTCYKCGEKGHYANRCHKGAL 270
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 31.9 bits (69), Expect = 0.17
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 123 MSSSVCYKCNRTGHFARECTQG 188
MS CYKC + GH +R C G
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNG 22
Score = 30.3 bits (65), Expect = 0.53
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 356 SCYNCNKTGHIARNC 400
+CY C + GHI+RNC
Sbjct: 5 NCYKCQQPGHISRNC 19
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 30.7 bits (66), Expect = 0.40
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 290 RCYRCNGTGHIAREFAQSPD---EPSCYNCNKTGHIARNC 400
RC C H + E +P+ + C NC GHI+++C
Sbjct: 429 RCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 30.7 bits (66), Expect = 0.40
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 290 RCYRCNGTGHIAREFAQSPD---EPSCYNCNKTGHIARNC 400
RC C H + E +P+ + C NC GHI+++C
Sbjct: 429 RCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 29.9 bits (64), Expect = 0.70
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 245
C+ C GH AR C + + G+ Q C
Sbjct: 576 CHYCKNVGHMARNCKKKAFAEKRKGYEDQARSITSC 611
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 359 CYNCNKTGHIARNC 400
C+ C GH+ARNC
Sbjct: 576 CHYCKNVGHMARNC 589
>U50310-1|AAA92538.1| 317|Caenorhabditis elegans Hypothetical
protein ZC487.2 protein.
Length = 317
Score = 29.5 bits (63), Expect = 0.93
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = -1
Query: 310 AVTSVATVSFFLAIPRKVSVRLHLKHFSRCRLKPESRDTTPPCVHSRAKCPVRLHL*QTL 131
A T +V+FF++IP S +LKHF + E R C+ C QTL
Sbjct: 117 AGTVYTSVNFFVSIPCSFSFCPYLKHFKEIVISFEPR-FLQKCI----ACAENFKFSQTL 171
Query: 130 ELIAIG 113
+L A G
Sbjct: 172 DLCAFG 177
>U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical
protein C28H8.9a protein.
Length = 372
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 278 EEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGH 385
E + C C+GT + + D SC++C ++GH
Sbjct: 252 EISTSCDFCSGTAFMNKNTKLPEDLVSCHDCGRSGH 287
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQGGVVSRDSGF-NRQRE 230
CYKC GH +++C Q S +SG NR+ E
Sbjct: 313 CYKCKVVGHVSKDCPQS---STNSGVTNRKTE 341
Score = 27.5 bits (58), Expect = 3.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 353 PSCYNCNKTGHIARNC 400
P CY C GH++++C
Sbjct: 311 PYCYKCKVVGHVSKDC 326
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 293 CYRCNGTGHIAREFAQSPDEPSCYNCNKTGH 385
CY+C GH++++ QS N KT H
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNSGVTN-RKTEH 342
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +2
Query: 293 CYRCNGTGHIAREFAQSPDE----PSCYNCNKTGHIARNC 400
C++C H E + + +C+ C + GHI+R+C
Sbjct: 256 CFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGHISRDC 295
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 126 SSSVCYKCNRTGHFARECTQGGV 194
S VC+KC H EC + GV
Sbjct: 252 SDGVCFKCGSMEHSIHECKKKGV 274
Score = 26.2 bits (55), Expect = 8.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3
Query: 132 SVCYKCNRTGHFARECTQ 185
+ C+ C + GH +R+C Q
Sbjct: 280 ATCFVCKQVGHISRDCHQ 297
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 27.9 bits (59), Expect = 2.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 138 CYKCNRTGHFARECTQ 185
C++C+R GHF C Q
Sbjct: 1357 CHQCHRIGHFVESCPQ 1372
>Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical
protein Y69H2.3d protein.
Length = 432
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +3
Query: 144 KCNRTGHFARE-CTQGGVVSRDSGFNRQREKCFKCNRTD 257
KCN F + CT GG V ++ F KC N D
Sbjct: 387 KCNEEPRFCPQVCTGGGCVCQEGFFRDNSGKCVTQNDCD 425
>Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical
protein Y69H2.3a protein.
Length = 537
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +3
Query: 144 KCNRTGHFARE-CTQGGVVSRDSGFNRQREKCFKCNRTD 257
KCN F + CT GG V ++ F KC N D
Sbjct: 492 KCNEEPRFCPQVCTGGGCVCQEGFFRDNSGKCVTQNDCD 530
>U97193-4|AAB52439.1| 691|Caenorhabditis elegans Hypothetical
protein C06A5.6 protein.
Length = 691
Score = 26.6 bits (56), Expect = 6.5
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = -3
Query: 317 APCRYICSNGQLLPCNPSQSVCAVALEALLTLPIETG-IPRHHAPLRAFAREMPGPVALV 141
A C Y+ + ++SVCA+ E+ LP + IP H +P ++
Sbjct: 449 ASCNYLEARQNSTQTANAESVCAIISESHAALPTDIQVIPSQHVLNENNHTVLPSVAPII 508
Query: 140 ANA*THCDRF 111
NA H F
Sbjct: 509 RNATGHSHIF 518
>U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical
protein C53B7.2 protein.
Length = 195
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -3
Query: 386 CGPSCCSCNTTARPGSVRTRALCAPCRYICSNGQLLPCN 270
C P+C S N R R C P ++ Q +P N
Sbjct: 42 CPPTCESPNPQCRVDCTRPSCTCLPGHVYSNSRQCIPAN 80
>AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 4 protein.
Length = 339
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/59 (25%), Positives = 22/59 (37%)
Frame = -3
Query: 395 SVRCGPSCCSCNTTARPGSVRTRALCAPCRYICSNGQLLPCNPSQSVCAVALEALLTLP 219
++ P C C TT + + + CAP C C QS C + A + P
Sbjct: 197 TISSAPQCQQCQTTCQQFAPVCQQQCAP---QCQQPSAPQCQQCQSACQSPVVAPVVAP 252
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 308 RYICSNGQLLPCNPSQSVCAVALEALLTL 222
R +C+ GQ + P S C V AL TL
Sbjct: 842 RMLCTGGQRVNSCPQNSYCHVGSSALTTL 870
>U97401-1|AAB52466.2| 336|Caenorhabditis elegans Hypothetical
protein F21A9.2 protein.
Length = 336
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +3
Query: 117 IAMSSSVCYKCNRT---GHFARECTQGGVVSRDSGFNRQREKCFKCNRTDT 260
++ SS Y ++ H R + GG R+ + EKC KC+ T
Sbjct: 229 VSFSSQTTYDAHKQLYCSHTTRVSSPGGGPHRNDSLRKVPEKCTKCDFVPT 279
>AL117206-4|CAB60447.1| 447|Caenorhabditis elegans Hypothetical
protein Y67A10A.6 protein.
Length = 447
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 287 DRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHI 388
D CY C+G G + + C +C+ TG +
Sbjct: 246 DLCYMCHGRGIKECHHCKGGGKKPCTSCSGTGSV 279
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 129 SSVCYKCNRTGHFARECT 182
S+ C+ C + GH A EC+
Sbjct: 201 SNTCFNCKKYGHRATECS 218
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 129 SSVCYKCNRTGHFARECT 182
S+ C+ C + GH A EC+
Sbjct: 201 SNTCFNCKKYGHRATECS 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,475,181
Number of Sequences: 27780
Number of extensions: 168340
Number of successful extensions: 810
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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