Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01037
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.56 
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   1.3  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   5.2  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.2  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   6.9  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   6.9  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    24   9.1  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   9.1  
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    24   9.1  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 0.56
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 145 ILQHRRPRLPLMQLEAPCSFNFCSLRA 65
           I Q     LP + L +PCSF  CSLRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 78  QKLKEHGASSCISGKRGRRCCNIWHWGSG 164
           Q   E  A +C  G  G  C  +W+W +G
Sbjct: 394 QSSAEAAALACSGGSDGVTCGYMWYWNNG 422


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 358 SWSDVENG*CLASPHGVGATMAAAVNCDTMLPATNSRSMLVQ 233
           ++SDV  G  L  PH   A    ++  D   P++ S S+L++
Sbjct: 296 NFSDVNFGDLLKKPHDFSADGLLSLQNDLTTPSSLSTSLLME 337


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 329 TSPVLDIAPGSDLFCFIWN*NA 394
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -1

Query: 232 QRLCFLPLFPLS*NRAREPLMESPDPQCHILQHRRPRLPLMQLEAP 95
           +++ FL L PLS    ++  +   +P+   +QH++  L  ++L  P
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP 180


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 429 LHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTG 334
           LH+I KF  +L +    + +++    AMSR G
Sbjct: 119 LHQIKKFSSDLQSLKSSMGERQKQQAAMSRRG 150


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 172 MESPDPQCHILQHRRPRLPLMQLEAPCSF 86
           M+S   Q ++L   RP LPL     P  F
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -2

Query: 324 HHLMAWGLPWQQQSTVTQC 268
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 215 QEAQPLLHKHTTGISGRQHCVTVDCCCHG 301
           QE   ++ KHT  I+ +Q  V    C HG
Sbjct: 262 QEFGNIIEKHTNSITEKQISVVRTYCGHG 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,807
Number of Sequences: 5004
Number of extensions: 32693
Number of successful extensions: 61
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)