Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS01037
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284... 32 0.24
05_07_0031 - 27183252-27183317,27183542-27184282 29 1.7
01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981... 29 1.7
09_02_0338 + 7426999-7428322,7428390-7428646 28 3.9
09_06_0369 + 22607676-22608131 27 5.1
05_03_0618 - 16262826-16263097,16263111-16263183 27 5.1
01_01_0662 - 5052390-5053022,5053182-5053319,5053429-5053656,505... 27 5.1
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 6.8
04_04_1373 + 33025059-33025422,33025510-33025551,33025836-330260... 27 6.8
09_06_0231 + 21733151-21734905 27 9.0
05_02_0001 - 5472040-5472424,5472560-5472972 27 9.0
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32... 27 9.0
01_06_0794 + 32050413-32050523,32050663-32051391 27 9.0
>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
35037372-35038586,35038659-35039316,35039331-35041012
Length = 1541
Score = 31.9 bits (69), Expect = 0.24
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 156 GSGDSISGSRARFQLSGNSGRKHSRCCTSILRELVAG-SIVSQLTAAAMVAPTP*GDAK- 329
GSG ISGS +L G +G +H +++REL G + ++L A A+ A G A+
Sbjct: 1197 GSGSGISGSGGISRLGGGAGEEHE----AVVRELTRGHELTARLRAEALRALRGQGQAEA 1252
Query: 330 HHPFSTSLQDRTFSVLFGI 386
F R F+V I
Sbjct: 1253 TATFILGEVSRAFTVCLSI 1271
>05_07_0031 - 27183252-27183317,27183542-27184282
Length = 268
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -2
Query: 363 SDPGAMSRTGDV*HHLMAWGLPWQQQSTVTQCCRP-LIPVVCLCSSGCASCRYSR 202
+DP A HHL WG P T P ++PVV L + G A+ R R
Sbjct: 5 ADPRAKPPAATSTHHLEPWGQPPPPPPTPAHRLPPTVLPVVALPAGGDAATRDRR 59
>01_01_1215 +
9815918-9816218,9816772-9816912,9816988-9817106,
9817922-9818191,9818330-9818369,9818519-9818616,
9818745-9818825
Length = 349
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 180 SRARFQLSGNSGRKHSRCCTS-ILRELVAGSIVSQLTAAAMVAPTP*GD 323
S++ LS +GRK R C+ ++R + SI + LT+AA+V P P GD
Sbjct: 137 SQSIVSLSSFAGRKRIRVCSGFVIRWNDSTSIGTILTSAALVRP-PCGD 184
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -1
Query: 175 LMESPDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 35
LM C L HR P L + L A L+AI KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443
>09_06_0369 + 22607676-22608131
Length = 151
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 175 LMESPDPQCHILQHRRPRLPL 113
L+ SPDP+CH + R R P+
Sbjct: 87 LLSSPDPECHETEVGRDRAPV 107
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 60 RIARREQKLKEHGASSCISGKRGRRC 137
R+ARR + LK + C G R RRC
Sbjct: 11 RMARRRRWLKRRRSGHCRCGLRSRRC 36
>01_01_0662 -
5052390-5053022,5053182-5053319,5053429-5053656,
5053736-5054035,5054568-5054636
Length = 455
Score = 27.5 bits (58), Expect = 5.1
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 117 GKRGRRCCNIWHWGSGDSISGSRARFQLSGNSGRKHSRCCTSILRELVAGSIVSQLTAA- 293
G +GR+ +W SGD GS R G G H R +S + + + TAA
Sbjct: 36 GGKGRKW-KLWRSSSGDH--GSLWRGSRGGGGGGGHHRSASSDASDDASSAAADPFTAAV 92
Query: 294 AMVAPTP 314
A VA P
Sbjct: 93 ATVARAP 99
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 177 GSRARFQLSGNSGRKHSRCCTS 242
GSRA F+ NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886
>04_04_1373 +
33025059-33025422,33025510-33025551,33025836-33026054,
33026145-33026384,33026483-33027508,33027770-33028545
Length = 888
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 315 MAWGLPWQQQSTVTQCCRPLIPVVCLC 235
M+W LPW+ + +P+I + C C
Sbjct: 1 MSWRLPWRSLVMILSVLQPMIYMSCGC 27
>09_06_0231 + 21733151-21734905
Length = 584
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 331 CLASPHGVGATMAAAVNCDTMLPAT 257
CL P GVGA CD M PAT
Sbjct: 47 CLRLPLGVGAGGCRVCACDEMDPAT 71
>05_02_0001 - 5472040-5472424,5472560-5472972
Length = 265
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 231 CCTSILRELVAGSIVSQLTAAAMVAPTP 314
CC +E++ G + QL A AP P
Sbjct: 20 CCFCSAQEVIVGGVGEQLATAPPAAPAP 47
>05_01_0046 +
320600-320631,320694-320733,320871-320957,321282-321378,
321532-321823,321850-321990,322285-322390
Length = 264
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +3
Query: 66 ARREQKLKEHGASSCISGKRGRRCCNIWHWGSGDSISGSRARFQLSGNSGRKHSR 230
A++ + E S G G + W+W D SGS + FQ S SR
Sbjct: 87 AQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141
>01_06_0794 + 32050413-32050523,32050663-32051391
Length = 279
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Frame = -2
Query: 276 TQCCRPLIPVVCLCSSG---CASC 214
T CC PL P V C G C+SC
Sbjct: 25 TVCCHPLKPPVLQCGVGHVICSSC 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,000,562
Number of Sequences: 37544
Number of extensions: 248755
Number of successful extensions: 654
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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