Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01037
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   1.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.5  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   6.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 63  IARREQKLKEHGASSCISGKRGRRCCNIWHWGSGDSISGSRARFQLSGNSGRKHS 227
           I+    K+ + G S+  S  + +R        SG SIS +  R + SG  GR+ S
Sbjct: 5   ISTENAKVSDSGYSNTCSNSQSQR-------SSGSSISRNSNRSESSGYCGRRPS 52


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 63  IARREQKLKEHGASSCISGKRGRRCCNIWHWGSGDSISGSRARFQLSGNSGRKHS 227
           I+    K+ + G S+  S  + +R        SG SIS +  R + SG  GR+ S
Sbjct: 5   ISTENAKVSDSGYSNTCSNSQSQR-------SSGSSISRNSNRSESSGYCGRRPS 52


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 16  RTLNFLNQHSSFY 54
           RTLN LN H S Y
Sbjct: 412 RTLNSLNNHKSIY 424


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 109 QLEAPCSFNFCSLRAIRRY 53
           + +   SF  C L+A+R Y
Sbjct: 131 ECDVALSFKLCMLKAMRNY 149


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 163 PDPQCHILQHRRPRLPLMQLE 101
           P+P   +++H  P LP   LE
Sbjct: 492 PEPLIELIEHWMPLLPNWILE 512


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 344 RERVMFSITSWRGGYHG 294
           RE + F  T W   Y+G
Sbjct: 424 REAITFQYTDWEEVYNG 440


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 344 RERVMFSITSWRGGYHG 294
           RE + F  T W   Y+G
Sbjct: 424 REAITFQYTDWEEVYNG 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,603
Number of Sequences: 438
Number of extensions: 2268
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)