Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01036
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135...    28   5.9  

>01_01_0154 -
           1355601-1356102,1356197-1356389,1356465-1356520,
           1356997-1357066,1357188-1357314,1357418-1357695,
           1357908-1358065,1358166-1358246,1358339-1358410,
           1358531-1358602,1358729-1358867,1358987-1360045,
           1360170-1360257
          Length = 964

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 589 NEPDLCSNGGCCKLKKQSTK 648
           N P+LC NG  CK  K+ +K
Sbjct: 507 NNPNLCINGNSCKAAKKKSK 526


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,875
Number of Sequences: 37544
Number of extensions: 284526
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)