Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01036
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70035-2|CAA93862.1|  440|Caenorhabditis elegans Hypothetical pr...    31   0.75 
U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF025456-3|AAB70956.1|  440|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z70035-2|CAA93862.1|  440|Caenorhabditis elegans Hypothetical
           protein R09D1.2 protein.
          Length = 440

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 528 RTIRFRENASL-IP*RYSIP*FKQRLGFVLCLQVSVGDHDHKI*CAVGASAFNNNKNVGS 352
           R   F    S+ I  RY+I      LG V    V +GDH + +  AV +  F  +KN G 
Sbjct: 379 RFFTFENQKSIAIKTRYAID---MNLGGVWIWSVDMGDHGNVLLSAVASQEFLTSKNNGK 435

Query: 351 NNY 343
           N Y
Sbjct: 436 NKY 438


>U28971-7|ABC48263.1|  309|Caenorhabditis elegans Hypothetical
           protein B0244.4 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = +1

Query: 280 IFVILCAISRSHCR----DETEMNDVIVASYIFIVIEGRRSYSALN-LVIMVAHTHLQ 438
           +FV+ C ++  +      + TEMND+    YIF+V    R+ SAL   VIM+A   LQ
Sbjct: 52  LFVVACFLNAYYLSILVPEFTEMNDITKKQYIFMV---SRAISALTACVIMLALRILQ 106


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
           protein C27F2.8 protein.
          Length = 1715

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = -1

Query: 366 KNVGSNNYIIHFSFISAVRT----GNCTQNDENLSPIFLYEYGLYVGLA*PIGVISDSFF 199
           + +G  + I+HF     V T    GNC  N   +SP   Y   +   ++ PI + +   +
Sbjct: 70  REIGKRSTIVHFYTSVGVFTYKMQGNCDSNPYRISPFTGYRLPMNSSISKPIVIFNPYAY 129

Query: 198 LIDVT 184
            + +T
Sbjct: 130 TMRIT 134


>AF025456-3|AAB70956.1|  440|Caenorhabditis elegans Hypothetical
           protein C46F9.2 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 334 FQFHLCSANGKLHTK*RKSI 275
           F+F L SA+GKLH+   KSI
Sbjct: 211 FEFRLISASGKLHSTEHKSI 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,382,060
Number of Sequences: 27780
Number of extensions: 279125
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)