Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01036
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 384 SAFNNNKNVGSNNYIIHFSFISAVRTGNCTQNDENLSPIFLYE 256
           S  N ++ V   NY+++ SFI A   G+  + DE+   +  YE
Sbjct: 361 SMANYDRGVFYKNYLLNVSFIDA--AGSEVKFDEHGDGLARYE 401


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 384 SAFNNNKNVGSNNYIIHFSFISAVRTGNCTQNDENLSPIFLYE 256
           S  N ++ V   NY+++ SFI A   G+  + DE+   +  YE
Sbjct: 451 SMANYDRGVFYKNYLLNVSFIDA--AGSEVKFDEHGDGLARYE 491


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 452 ALSYVCK*VWATMITRFSAL*ERLPSI 372
           AL   C+  W     RF+ L  RLP+I
Sbjct: 365 ALEGYCRVAWPDDAGRFAKLLLRLPAI 391


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 452 ALSYVCK*VWATMITRFSAL*ERLPSI 372
           AL   C+  W     RF+ L  RLP+I
Sbjct: 365 ALEGYCRVAWPDDAGRFAKLLLRLPAI 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,125
Number of Sequences: 438
Number of extensions: 3611
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)