Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS01035
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.0
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual 27 1.8
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 2.3
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 27 3.1
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 26 4.1
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 26 5.4
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 7.2
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 25 9.5
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 9.5
>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 484 TQPQIMSSKQEIWPSFNKLSFLLIKNKNEISH 389
T Q+M +K+E WP+ KL ++ K E H
Sbjct: 110 TYDQLMKAKEEKWPACQKLHKVVSIKKEESKH 141
>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +2
Query: 149 IQLCLVIKLQCTYSQHNLVLHCTQVFNLCFK---NVLGLYQNYKNKRLTELFVEVKLSPF 319
+ L +I + +++ + VL T F ++ NVLG+Y++ K + + + + ++
Sbjct: 11 LNLLQIIAAESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILMIADD 70
Query: 320 YACDIINL 343
YAC+ NL
Sbjct: 71 YACNSRNL 78
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 443 GPNFLFRAHYLRLCTSELGDVH-NLTLDSSYQYIIIKLL*MYNMGDILFKKT 595
G N L + YLRL SE D+H L++D+++ + LL NM ++ +KT
Sbjct: 130 GLNLLQQLRYLRLQLSEKEDLHKKLSVDNAHLIKQLDLL-SSNMKTLMKEKT 180
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -2
Query: 406 KNEISHSLQSLVRTEKIYQKP*IYNITSIKRR*FHFHKQ 290
K++ S++++ KIY++P Y +++ R F +KQ
Sbjct: 744 KSKGPESVRAMYELAKIYEQPDRYGVSATPERKFELYKQ 782
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 188 SQHNLVLHCTQVFNLCFKNVLGLYQN---YKNKRLTELFVEVKLSPFY 322
+ L+ H Q+ + F + G+Y + YK + +L +E +L PFY
Sbjct: 12 NDEELIQHLVQLVDGGFLDPQGVYSSAPAYKTNIVRKLMLERRLMPFY 59
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 137 RLHRIQLCLVIKLQCTYSQHNLVLHCTQVFNLCFKNVLGLYQNYK--NKRLTELFVE 301
R H + +V S + + T + +L + VLGLY+ +K +RL E +++
Sbjct: 47 RAHSVSYRVVSVRDLRASLNEKINQLTSIIDLTREQVLGLYRYFKWNRERLLERYID 103
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +3
Query: 375 KDCNEWDISFLFFINKKDNLLKLGQISCFE 464
+DC W+ + D LK+ Q++C E
Sbjct: 210 EDCFHWEAVWSSITRNTDERLKMAQVNCDE 239
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 170 KLQCTYSQHNLVLHCTQ--VFNLCFKNVLGLYQ 262
KL + +NL+ C Q VFNL F +LG+YQ
Sbjct: 438 KLLRLFETYNLIFPCNQYWVFNLEF--LLGIYQ 468
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Frame = +2
Query: 266 YKNKRLTELFVEVKLSPFYACDIINLRFLVYF-------FCPN 373
Y + +T + V + PF +INL FL YF FCPN
Sbjct: 170 YVDYGVTYVSVPSIVRPFLKRSLINLGFLYYFYMAAVAIFCPN 212
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 601 VRGLFK*YISHIIHLK*FDNYILIRAI 521
+RG+F H++HL F NY + R++
Sbjct: 1420 IRGVFVSGCGHLMHLGCFKNYYVARSM 1446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,465
Number of Sequences: 5004
Number of extensions: 54983
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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