Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01035
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415...    29   3.2  
04_04_0010 - 22137258-22137428,22137734-22137794,22137917-221379...    28   5.6  

>06_01_0581 -
           4153668-4153883,4154070-4155104,4155718-4156292,
           4158457-4158826,4159925-4160590,4161008-4161223,
           4161725-4161793
          Length = 1048

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 437 EAGPNFLFRAHYLRLCTSELGDVHNLTLDSS 529
           EA PN +   + + LCT++L D+ N  LD++
Sbjct: 420 EANPNIVDNLNQMELCTNKLLDILNSILDTT 450


>04_04_0010 -
           22137258-22137428,22137734-22137794,22137917-22137984,
           22138524-22138733,22138867-22138907,22139011-22139060,
           22139260-22139348,22139468-22139542,22139791-22139882,
           22140131-22140182,22140515-22140631,22141267-22141496,
           22141618-22141672,22141781-22141900
          Length = 476

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 128 LLYRLHRIQLCLVIKLQCTYS 190
           L YR+ RI +C+V+++ C+YS
Sbjct: 390 LPYRVSRIVICVVVQVLCSYS 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,564,450
Number of Sequences: 37544
Number of extensions: 264110
Number of successful extensions: 420
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)