Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01035
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    31   0.54 
AC024808-3|AAK29925.1|  183|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 164 VIKLQCTYSQHNLVLHCTQVFNLCFKNVLGLYQNYKNKRLTELFVEVKLSPFYACDIINL 343
           +  L C Y   N+ L+C ++     + +      +++    E+ +E +L     CD + L
Sbjct: 666 IFSLFCRYGSENVHLYCLKMIKKSLQTLASNILEHEHILKGEVCIETELQKRLVCDAVLL 725

Query: 344 -RFLVYFFC 367
             F  YF C
Sbjct: 726 TEFFGYFSC 734


>AC024808-3|AAK29925.1|  183|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.6 protein.
          Length = 183

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 149 IQLCLVIKLQCTYSQHNLVLHCT--QVFNLCFKNVLGLYQNYKNKRLTELFVEVKLSPFY 322
           I++C+ I L      HN+ +H +   VFN  F+N++   +    ++  E FVE    PF+
Sbjct: 53  IEVCVRILLSLV---HNVFVHASYYNVFN--FENLVSFDKLLPAEKDLEKFVEKITGPFF 107

Query: 323 AC 328
            C
Sbjct: 108 LC 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,234,798
Number of Sequences: 27780
Number of extensions: 298047
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)