Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01031
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    27   4.0  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    26   7.0  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   9.2  

>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +3

Query: 195 KSQQMY-GVHETMGISDV*HRTRTGDVSFVPNAQRRPFRGPSPTGRVPRWHRRGYRVASR 371
           KS  MY  + +T     V     T   S +P    + +  PSP        R+GYR +  
Sbjct: 184 KSNMMYKNIPQTAVDDQVVGLETTRTTSSIPKVDGKNWEYPSPQQMYNAMWRKGYRDSGE 243

Query: 372 KVP 380
            VP
Sbjct: 244 NVP 246


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 304 SVGQALQAEYHGGTAEVIVSPRGKYLRLTNI 396
           +VG  ++A++  G   V ++P G Y + TN+
Sbjct: 71  AVGDKVEADFKVGDRVVYLTPFGAYAQYTNV 101


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -1

Query: 206 LLTLESLSVFNVSCMGFWNIQLSFIVDSQYETAV 105
           L+ L   S FNV C+   ++  +++ D ++   +
Sbjct: 682 LVALSKTSAFNVDCITLKHVDFTYLDDEKFRATI 715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,040
Number of Sequences: 5004
Number of extensions: 63818
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)