Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01031
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561...    32   0.44 
01_01_0384 - 2970369-2970726,2970812-2970882,2971428-2971509,297...    32   0.44 
05_01_0453 - 3592555-3592897,3592997-3593067,3593372-3593465,359...    30   2.4  
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293     28   7.2  
07_03_0521 + 19016824-19017000,19017064-19017099,19017860-190186...    28   7.2  

>06_03_1494 +
           30554997-30555608,30555707-30555915,30556006-30556155,
           30556254-30556312,30556852-30556961,30557216-30557322,
           30557443-30557581,30557705-30557821,30557918-30558025,
           30558221-30558292,30558783-30558948,30559044-30559165,
           30559245-30559382,30559462-30559604,30559699-30559761,
           30560107-30560170,30560238-30560373,30560478-30560551,
           30560640-30560734,30560829-30560860,30560973-30561175
          Length = 972

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = +1

Query: 175 LKTDKDSRVSRCTVCMRQWASQTYSTAREPVMLALYPTPNDDLSVGQALQAEYHGGTAEV 354
           LK ++  R   C   + QW       A EPV+ ++Y  P+    V +AL+A +H   A  
Sbjct: 538 LKYNETGREKDCLPRVGQWNMMNKDFALEPVLPSMYARPD---QVERALKARFH--DAMN 592

Query: 355 IVSPRGKYLRL 387
           I+ P+ K L L
Sbjct: 593 ILGPQHKELDL 603


>01_01_0384 -
           2970369-2970726,2970812-2970882,2971428-2971509,
           2971757-2971818,2972308-2972401,2972502-2972569,
           2972681-2972747,2972830-2972960,2973093-2973200,
           2973577-2973642,2973706-2973774,2973990-2974115,
           2974167-2974284,2974741-2974847,2975889-2976009,
           2976162-2976235,2976955-2977051,2977564-2977679,
           2978218-2978313,2978426-2978635,2979101-2979253
          Length = 797

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +1

Query: 91  CNYFATAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRCTVCMRQWASQTYSTARE 261
           CN  A  V  W++ + D W  Q    E  +   +  + RCT    +      ST +E
Sbjct: 498 CNVEAGVVKTWINFLEDTWQLQSSYNEQKEKRTNDELERCTDNFLKLTKYHLSTFKE 554


>05_01_0453 -
           3592555-3592897,3592997-3593067,3593372-3593465,
           3593547-3593614,3593694-3593760,3593924-3594054,
           3594145-3594252,3594671-3594757,3594991-3595056,
           3595564-3595630,3596116-3596192,3596358-3596417,
           3597363-3597480,3597833-3597906,3598216-3598312,
           3599328-3599380,3599535-3599630,3599768-3599965,
           3600556-3600722,3600813-3600882,3601428-3601448,
           3602851-3602982
          Length = 754

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = +1

Query: 82  LGRCNYFATAVSYWLSTINDNWMFQKPIQETLKTDKDSRVSRC 210
           +  CN  A  V  W++ + D W  Q    E  +      + RC
Sbjct: 505 IASCNVEANVVKTWINFLEDTWQLQSTYNEQKEKKTCDELERC 547


>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
          Length = 352

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 303 FRGPSPTGRVPRWHRRGYRVASRKVPSFNK 392
           ++G +P G    W    YR+ S+ +P  NK
Sbjct: 132 YKGRAPRGEKTNWVMHEYRLHSKSIPKSNK 161


>07_03_0521 +
           19016824-19017000,19017064-19017099,19017860-19018624,
           19018772-19018864,19018944-19019114,19019206-19019397,
           19019443-19019530,19019617-19019685,19019841-19020054,
           19020136-19020334,19020406-19020504,19020594-19020850,
           19020927-19021002,19021091-19021204
          Length = 849

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 275 ANITGSRAVLYV*DAHCLMHTVHLLTLESLSVFNV 171
           A+ TG   V  V D+H ++  VHLL    L VFN+
Sbjct: 685 AHFTGPEVVYDVLDSHMILIPVHLLKHYVLYVFNM 719


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,954,787
Number of Sequences: 37544
Number of extensions: 376349
Number of successful extensions: 838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)