Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS01031
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 94 9e-20
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 94 9e-20
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 91 6e-19
J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 91 6e-19
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 89 3e-18
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 89 3e-18
J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV) co... 89 3e-18
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 86 2e-17
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 86 2e-17
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 86 2e-17
Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical p... 28 8.6
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 94.3 bits (224), Expect = 9e-20
Identities = 43/77 (55%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Frame = +1
Query: 1 DASGQSLISPGSCLREFRTRPFIECNGLGRCNYFATAVSYWLSTINDNWMFQKPIQETLK 180
+ +GQSL SPGSCL EFR PFIEC+G G CNY+AT +WLS ++ + F+KP+ +TLK
Sbjct: 1425 EGTGQSLQSPGSCLEEFRAVPFIECHGRGTCNYYATNHGFWLSIVDQDKQFRKPMSQTLK 1484
Query: 181 TD--KDSRVSRCTVCMR 225
KD RVSRC VC++
Sbjct: 1485 AGGLKD-RVSRCQVCLK 1500
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 4 ASGQSLISPGSCLREFRTRPFIECNGLGRCNYFA-TAVSYWLSTINDNWMFQKPIQETLK 180
ASGQ L PGSCL +F T PF+ CN C+ + S+WLST P+ T
Sbjct: 1315 ASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAI 1374
Query: 181 TDKDSRVSRCTVC 219
+SRC VC
Sbjct: 1375 R---PYISRCAVC 1384
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 94.3 bits (224), Expect = 9e-20
Identities = 43/77 (55%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Frame = +1
Query: 1 DASGQSLISPGSCLREFRTRPFIECNGLGRCNYFATAVSYWLSTINDNWMFQKPIQETLK 180
+ +GQSL SPGSCL EFR PFIEC+G G CNY+AT +WLS ++ + F+KP+ +TLK
Sbjct: 1682 EGTGQSLQSPGSCLEEFRAVPFIECHGRGTCNYYATNHGFWLSIVDQDKQFRKPMSQTLK 1741
Query: 181 TD--KDSRVSRCTVCMR 225
KD RVSRC VC++
Sbjct: 1742 AGGLKD-RVSRCQVCLK 1757
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 4 ASGQSLISPGSCLREFRTRPFIECNGLGRCNYFA-TAVSYWLSTINDNWMFQKPIQETLK 180
ASGQ L PGSCL +F T PF+ CN C+ + S+WLST P+ T
Sbjct: 1572 ASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAI 1631
Query: 181 TDKDSRVSRCTVC 219
+SRC VC
Sbjct: 1632 R---PYISRCAVC 1641
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 91.5 bits (217), Expect = 6e-19
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Frame = +1
Query: 1 DASGQSLISPGSCLREFRTRPFIECNGLGRCNYFATAVSYWLSTINDNWMFQKPIQETLK 180
+ +GQSL SPGSCL EFR PFIEC+G G CNY+AT +W S ++ + F+KP+ +TLK
Sbjct: 1681 EGTGQSLQSPGSCLEEFRAVPFIECHGRGTCNYYATNHGFWPSIVDQDKQFRKPMSQTLK 1740
Query: 181 TD--KDSRVSRCTVCMR 225
KD RVSRC VC++
Sbjct: 1741 AGGLKD-RVSRCQVCLK 1756
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 4 ASGQSLISPGSCLREFRTRPFIECNGLGRCNYFA-TAVSYWLSTINDNWMFQKPIQETLK 180
ASGQ L PGSCL +F T PF+ CN C+ + S+WLST P+ T
Sbjct: 1571 ASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAI 1630
Query: 181 TDKDSRVSRCTVC 219
+SRC VC
Sbjct: 1631 R---PYISRCAVC 1640
>J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein.
Length = 313
Score = 91.5 bits (217), Expect = 6e-19
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Frame = +1
Query: 1 DASGQSLISPGSCLREFRTRPFIECNGLGRCNYFATAVSYWLSTINDNWMFQKPIQETLK 180
+ +GQSL SPGSCL EFR PFIEC+G G CNY+AT +W S ++ + F+KP+ +TLK
Sbjct: 236 EGTGQSLQSPGSCLEEFRAVPFIECHGRGTCNYYATNHGFWPSIVDQDKQFRKPMSQTLK 295
Query: 181 TD--KDSRVSRCTVCMR 225
KD RVSRC VC++
Sbjct: 296 AGGLKD-RVSRCQVCLK 311
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 4 ASGQSLISPGSCLREFRTRPFIECNGLGRCNYFA-TAVSYWLSTINDNWMFQKPIQETLK 180
ASGQ L PGSCL +F T PF+ CN C+ + S+WLST P+ T
Sbjct: 126 ASGQDLGQPGSCLSKFNTMPFMFCNMNSVCHVSSRNDYSFWLSTDEPMTPMMNPVTGTAI 185
Query: 181 TDKDSRVSRCTVC 219
+SRC VC
Sbjct: 186 R---PYISRCAVC 195
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Frame = +1
Query: 1 DASGQSLISPGSCLREFRTRPFIECNGL-GRCNYFATAVSYWLSTINDNWMFQKPIQETL 177
+ GQSL SPGSCL +FR PFIECNG G C+YFA S+WL+TI+++ F+ P +TL
Sbjct: 1676 EGGGQSLSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTL 1735
Query: 178 KT-DKDSRVSRCTVCMR 225
K+ + +RVSRC VC++
Sbjct: 1736 KSGNLRTRVSRCQVCVK 1752
Score = 46.4 bits (105), Expect = 2e-05
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +1
Query: 13 QSLISPGSCLREFRTRPFIECNGLGRCNYFA-TAVSYWLSTINDNWMFQKPIQETLKTDK 189
Q L GSCL+ F T PF+ C+ CNY + SYWLST M P+ E +
Sbjct: 1571 QDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNDKSYWLSTSEAIPMM--PVNE---REI 1625
Query: 190 DSRVSRCTVCMRQWASQTYSTAREPVMLALYPTPNDDLSVGQALQAEYHGGTAE 351
+ +SRC VC + + T + + + + P L +G + A + G AE
Sbjct: 1626 EPYISRCAVC--EAPANTIAVHSQTIQIPNCPAGWSSLWIGYSF-AMHTGAGAE 1676
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Frame = +1
Query: 1 DASGQSLISPGSCLREFRTRPFIECNGL-GRCNYFATAVSYWLSTINDNWMFQKPIQETL 177
+ GQSL SPGSCL +FR PFIECNG G C+YFA S+WL+TI+++ F+ P +TL
Sbjct: 1677 EGGGQSLSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTL 1736
Query: 178 KT-DKDSRVSRCTVCMR 225
K+ + +RVSRC VC++
Sbjct: 1737 KSGNLRTRVSRCQVCVK 1753
Score = 46.4 bits (105), Expect = 2e-05
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +1
Query: 13 QSLISPGSCLREFRTRPFIECNGLGRCNYFA-TAVSYWLSTINDNWMFQKPIQETLKTDK 189
Q L GSCL+ F T PF+ C+ CNY + SYWLST M P+ E +
Sbjct: 1572 QDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNDKSYWLSTSEAIPMM--PVNE---REI 1626
Query: 190 DSRVSRCTVCMRQWASQTYSTAREPVMLALYPTPNDDLSVGQALQAEYHGGTAE 351
+ +SRC VC + + T + + + + P L +G + A + G AE
Sbjct: 1627 EPYISRCAVC--EAPANTIAVHSQTIQIPNCPAGWSSLWIGYSF-AMHTGAGAE 1677
>J05066-1|AAA27989.1| 261|Caenorhabditis elegans alpha-2 (IV)
collagen protein.
Length = 261
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Frame = +1
Query: 1 DASGQSLISPGSCLREFRTRPFIECNGL-GRCNYFATAVSYWLSTINDNWMFQKPIQETL 177
+ GQSL SPGSCL +FR PFIECNG G C+YFA S+WL+TI+++ F+ P +TL
Sbjct: 179 EGGGQSLSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTL 238
Query: 178 KT-DKDSRVSRCTVCMR 225
K+ + +RVSRC VC++
Sbjct: 239 KSGNLRTRVSRCQVCVK 255
Score = 46.8 bits (106), Expect = 2e-05
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +1
Query: 13 QSLISPGSCLREFRTRPFIECNGLGRCNYFA-TAVSYWLSTINDNWMFQKPIQETLKTDK 189
Q L GSCL+ F T PF+ C+ CNY + SYWLST M P+ E +
Sbjct: 74 QDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMM--PVNE---REI 128
Query: 190 DSRVSRCTVCMRQWASQTYSTAREPVMLALYPTPNDDLSVGQALQAEYHGGTAE 351
+ +SRC VC + + T + + + + P L +G + A + G AE
Sbjct: 129 EPYISRCAVC--EAPANTIAVHSQTIQIPNCPAGWSSLWIGYSF-AMHTGAGAE 179
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 86.2 bits (204), Expect = 2e-17
Identities = 40/77 (51%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Frame = +1
Query: 1 DASGQSLISPGSCLREFRTRPFIECNGL-GRCNYFATAVSYWLSTINDNWMFQKPIQETL 177
+ GQS SPGSCL +FR PFIECNG G C+YFA S+WL+TI+++ F+ P +TL
Sbjct: 1677 EGGGQSPSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTL 1736
Query: 178 KT-DKDSRVSRCTVCMR 225
K+ + +RVSRC VC++
Sbjct: 1737 KSGNLRTRVSRCQVCVK 1753
Score = 46.8 bits (106), Expect = 2e-05
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +1
Query: 13 QSLISPGSCLREFRTRPFIECNGLGRCNYFA-TAVSYWLSTINDNWMFQKPIQETLKTDK 189
Q L GSCL+ F T PF+ C+ CNY + SYWLST M P+ E +
Sbjct: 1572 QDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMM--PVNE---REI 1626
Query: 190 DSRVSRCTVCMRQWASQTYSTAREPVMLALYPTPNDDLSVGQALQAEYHGGTAE 351
+ +SRC VC + + T + + + + P L +G + A + G AE
Sbjct: 1627 EPYISRCAVC--EAPANTIAVHSQTIQIPNCPAGWSSLWIGYSF-AMHTGAGAE 1677
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 86.2 bits (204), Expect = 2e-17
Identities = 40/77 (51%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Frame = +1
Query: 1 DASGQSLISPGSCLREFRTRPFIECNGL-GRCNYFATAVSYWLSTINDNWMFQKPIQETL 177
+ GQS SPGSCL +FR PFIECNG G C+YFA S+WL+TI+++ F+ P +TL
Sbjct: 1676 EGGGQSPSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTL 1735
Query: 178 KT-DKDSRVSRCTVCMR 225
K+ + +RVSRC VC++
Sbjct: 1736 KSGNLRTRVSRCQVCVK 1752
Score = 46.8 bits (106), Expect = 2e-05
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +1
Query: 13 QSLISPGSCLREFRTRPFIECNGLGRCNYFA-TAVSYWLSTINDNWMFQKPIQETLKTDK 189
Q L GSCL+ F T PF+ C+ CNY + SYWLST M P+ E +
Sbjct: 1571 QDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMM--PVNE---REI 1625
Query: 190 DSRVSRCTVCMRQWASQTYSTAREPVMLALYPTPNDDLSVGQALQAEYHGGTAE 351
+ +SRC VC + + T + + + + P L +G + A + G AE
Sbjct: 1626 EPYISRCAVC--EAPANTIAVHSQTIQIPNCPAGWSSLWIGYSF-AMHTGAGAE 1676
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 86.2 bits (204), Expect = 2e-17
Identities = 40/77 (51%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Frame = +1
Query: 1 DASGQSLISPGSCLREFRTRPFIECNGL-GRCNYFATAVSYWLSTINDNWMFQKPIQETL 177
+ GQS SPGSCL +FR PFIECNG G C+YFA S+WL+TI+++ F+ P +TL
Sbjct: 1713 EGGGQSPSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTL 1772
Query: 178 KT-DKDSRVSRCTVCMR 225
K+ + +RVSRC VC++
Sbjct: 1773 KSGNLRTRVSRCQVCVK 1789
Score = 46.8 bits (106), Expect = 2e-05
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +1
Query: 13 QSLISPGSCLREFRTRPFIECNGLGRCNYFA-TAVSYWLSTINDNWMFQKPIQETLKTDK 189
Q L GSCL+ F T PF+ C+ CNY + SYWLST M P+ E +
Sbjct: 1608 QDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNEKSYWLSTSEAIPMM--PVNE---REI 1662
Query: 190 DSRVSRCTVCMRQWASQTYSTAREPVMLALYPTPNDDLSVGQALQAEYHGGTAE 351
+ +SRC VC + + T + + + + P L +G + A + G AE
Sbjct: 1663 EPYISRCAVC--EAPANTIAVHSQTIQIPNCPAGWSSLWIGYSF-AMHTGAGAE 1713
>Z93782-3|CAB07855.1| 1294|Caenorhabditis elegans Hypothetical
protein C47A10.1 protein.
Length = 1294
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 265 VMLALYPTPNDDLSVGQALQAEYHGGTA 348
+++A++P ++VGQAL +YHGG+A
Sbjct: 854 LVMAIFPF----MAVGQALMMKYHGGSA 877
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 269 C*LCTQRPTTTFPWAKPYRQSTTVAP 346
C CT PT T A P +TTVAP
Sbjct: 187 CKRCTSGPTATTSTAAPAAPTTTVAP 212
>Z81484-12|CAB03973.1| 1294|Caenorhabditis elegans Hypothetical
protein C47A10.1 protein.
Length = 1294
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 265 VMLALYPTPNDDLSVGQALQAEYHGGTA 348
+++A++P ++VGQAL +YHGG+A
Sbjct: 854 LVMAIFPF----MAVGQALMMKYHGGSA 877
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,047,729
Number of Sequences: 27780
Number of extensions: 359048
Number of successful extensions: 810
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -