Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01029
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.1  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   5.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   5.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 631 VWHGVIKHSHDSKLT*AHSSQTRSRSL 551
           VW  ++KH +  K+   HSS T  R+L
Sbjct: 157 VWVELLKHFNYMKVIFIHSSDTDGRAL 183


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 440 GVKWLLEPIDIYDVNAPPILRYKFEGLK 357
           GVK L+  ++  D+  PP    +FE +K
Sbjct: 144 GVKQLIVGVNKMDMTDPPYSEARFEEIK 171


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 440 GVKWLLEPIDIYDVNAPPILRYKFEGLK 357
           GVK L+  ++  D   PP    +FE +K
Sbjct: 71  GVKQLIVGVNKMDSTEPPYSETRFEEIK 98


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 440 GVKWLLEPIDIYDVNAPPILRYKFEGLK 357
           GVK L+  ++  D   PP    +FE +K
Sbjct: 87  GVKQLIVGVNKMDSTEPPYSETRFEEIK 114


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 440 GVKWLLEPIDIYDVNAPPILRYKFEGLK 357
           GVK L+  ++  D   PP    +FE +K
Sbjct: 144 GVKQLIVGVNKMDSTEPPYSETRFEEIK 171


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 324 GLKGGAAVVSILKTFEFISQDGWRIYVVDVYGLQ 425
           G+   A   ++ + F++++ DGW   +  V GL+
Sbjct: 211 GILEAARRSNLSQPFQWLASDGWGRQIKLVEGLE 244


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +3

Query: 324 GLKGGAAVVSILKTFEFISQDGWRIYVVDVYGLQ 425
           G+   A   ++ + F++++ DGW   +  V GL+
Sbjct: 301 GILEAARRSNLSQPFQWLASDGWGRQIKLVEGLE 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,006
Number of Sequences: 438
Number of extensions: 4196
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)