Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01027
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    31   0.21 
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   1.9  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    26   5.9  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.9  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   7.9  

>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 26/94 (27%), Positives = 47/94 (50%)
 Frame = +3

Query: 63  VLSASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYGDKHDAFVALAKDSKDVDE 242
           V  AS+ +  + + EL+  S N +++  +      ++  P G  HD  + LA+   D++E
Sbjct: 168 VFQASMGDAISTNDELESWSNNLLLSMLDQK----NITVPIGASHDDLIVLARRYYDIEE 223

Query: 243 LLIAKSA*RITVKRITRYWQRSTELQKIIFLW*D 344
               KS  ++T   IT   Q +  +++II LW D
Sbjct: 224 ---RKSQDKVT--NITDS-QPAPYMKEIIHLWSD 251


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -1

Query: 486 ASLSKLLTQPGKLRYKPVFSRTNRRSSSVVKPWESSNGIGSFLPLRKSLTTGKLS 322
           +SL   L  P K  ++PV  R    SS +VKP  SS+   S   L  SL + +L+
Sbjct: 429 SSLLTPLALPNKKAFQPVKFRVPSFSSPLVKPASSSSFGRSHSHLGTSLRSNELN 483


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 272 YGEKDNEVLAEKYGATK 322
           YGE DN  L  KYG TK
Sbjct: 294 YGELDNSELFRKYGFTK 310


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 51  VFLAVLSASLANTSTGSVELDEISFNKVINKFEASLVKFDVAFPYGDKH 197
           V L  LS SL  +      +D+ISFN  +++ +AS       +  GDKH
Sbjct: 63  VSLKRLSKSLDRSLPSENTIDQISFNHAMSEEDAS------GYQIGDKH 105


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 205 KASCLSPYGNATSNFTREASNL-FITLLNEISSNSTEPVD 89
           K +  +PY NA  NFT   S L +I L++    N ++ ++
Sbjct: 484 KTTLNTPYANAVGNFTGLFSGLIYIVLISYFFPNKSDDLN 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,287
Number of Sequences: 5004
Number of extensions: 45678
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)