Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01027
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0236 - 1725061-1727070                                           31   0.66 
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966...    29   4.6  
01_01_0490 + 3620523-3623403,3623524-3623996                           28   6.1  

>07_01_0236 - 1725061-1727070
          Length = 669

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -3

Query: 202 ASCLSPYGNATSNFTREASNLFITLLNEISSNSTEPVDVFAREADSTAKN 53
           A  L+ + + T NF+R  SN F+ LLN+ ++ +T    +FA E D+   N
Sbjct: 106 AQGLTFFVSPTKNFSRAFSNQFLGLLNKKNNGNTSN-HIFAVELDTVLNN 154


>05_06_0166 +
           26093618-26095381,26095820-26096039,26096345-26096674,
           26097481-26098029,26098366-26098426,26099737-26099824,
           26100240-26100299
          Length = 1023

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 607 EKIIEKGDQFINTEHERVKKILSGKVS 687
           E I+ +G + +N EH R   I+ GKVS
Sbjct: 913 ENIVLQGREVVNNEHGRQNSIVRGKVS 939


>01_01_0490 + 3620523-3623403,3623524-3623996
          Length = 1117

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 278  EKDNEVLAEKYGATKDNFPVVRLFLKGKN-DPIPFDDSQGFTTDE 409
            + DN +L E+Y A   +F + R+   G N  P PF  S G+   E
Sbjct: 917  KSDNILLGERYEACLADFGLARVADDGANSSPPPFAGSYGYIAPE 961


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,835,695
Number of Sequences: 37544
Number of extensions: 248117
Number of successful extensions: 642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)