Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01027
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1...    29   4.2  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    29   4.2  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    29   4.2  
AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR...    29   4.2  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      29   4.2  
AL110500-16|CAD92405.1|  356|Caenorhabditis elegans Hypothetical...    27   9.6  
AC006610-6|AAK85452.1|  395|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1,
           isoform c protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 344 LFLKGKNDPIPFDDSQGFTTDELRRF 421
           LF+ G N  +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
           isoform a protein.
          Length = 1409

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 344 LFLKGKNDPIPFDDSQGFTTDELRRF 421
           LF+ G N  +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
           isoform b protein.
          Length = 1444

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 344 LFLKGKNDPIPFDDSQGFTTDELRRF 421
           LF+ G N  +PF+ ++ FTT + R F
Sbjct: 379 LFVSGNNGQVPFEFTEHFTTKQKRPF 404


>AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR-1
           protein.
          Length = 942

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 344 LFLKGKNDPIPFDDSQGFTTDELRRF 421
           LF+ G N  +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 344 LFLKGKNDPIPFDDSQGFTTDELRRF 421
           LF+ G N  +PF+ ++ FTT + R F
Sbjct: 344 LFVSGNNGQVPFEFTEHFTTKQKRPF 369


>AL110500-16|CAD92405.1|  356|Caenorhabditis elegans Hypothetical
           protein Y87G2A.16 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 194 FISVWKCNVEFY*RSFKFVYYFVKRNF 114
           F   W+CN+  Y  +F F+ Y    NF
Sbjct: 253 FPQSWRCNLHQYFSNFTFILYSSSHNF 279


>AC006610-6|AAK85452.1|  395|Caenorhabditis elegans Hypothetical
           protein C30F12.6 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 361 FTFEEESHHRKIIFCSSVLLCQYLVILFTVILHADLAI 248
           F  E  SH  KI+F    +L   L I+  +I++A + I
Sbjct: 186 FRLERNSHAYKIVFLLDFVLWYVLPIMCDIIIYAKIGI 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,580,492
Number of Sequences: 27780
Number of extensions: 246536
Number of successful extensions: 757
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)