Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS01026X
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 30 0.20
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 28 1.1
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 27 2.5
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 26 3.3
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 3.3
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 7.5
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 25 7.5
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 25 10.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 10.0
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 30.3 bits (65), Expect = 0.20
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = -2
Query: 401 PWDLLLLQHELLPFSIRYLRASLIRALD-LEGAIEVHAGEVRDEVR-GRPLSPIGFSSPS 228
P D L L+H L + LRA + ++ D L+ E +G D + P SP SSP
Sbjct: 46 PLDALALKHRDLNRKLN-LRAMMSKSEDNLQILKETTSGSSSDLLNIESPASPAEASSPF 104
Query: 227 TTQATGSHLPQHWPLSASAGTYF 159
T + H P+H+ ++ + F
Sbjct: 105 TVRTPTVHDPEHYFVAQKLSSVF 127
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 231 WRGEANRRKWTSSDFITNFTCVNLNG-TLQVQSSNETCPEISDAERKQFVLKE 386
W+ EA+RR TSSD +F+ ++ + L+ +SS+E P S + + +K+
Sbjct: 243 WKSEASRRNLTSSDETNSFSKLHQSQFGLKEESSHE--PRSSQHWKNEVAMKD 293
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 438 LDTPHVRSWGSTSLGPSAPSARTASVQHP 352
+DT V S GST++G S + T++ HP
Sbjct: 1 MDTTAVASKGSTNVGSSTDTLSTSASLHP 29
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 3.3
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 240 EANRRKWTSSDFITNFTCVNLNGTLQ-VQSSNETCPEISDAERKQFVLKEQKVPGKCYPK 416
+ NR T + + T + +N Q V E P+IS A +++ +KE+ + KC+
Sbjct: 81 DCNRENNTEDKNVIS-TGIAVNEKYQSVLKLKEKAPQISSAAKRKSFIKERGMLAKCF-- 137
Query: 417 IEREACRVGDQIYQ 458
R+ D+++Q
Sbjct: 138 ----LARLEDEVFQ 147
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 3.3
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +3
Query: 291 CVNLNGTLQVQSSNETCPEISDAERKQFVLKEQKVP---GKCYPKIEREACRVGDQIYQV 461
CV +N L ++S+E C + +A +FV +Q P + + A GD +
Sbjct: 426 CVTINDILGDETSSEQCIQKLEAAFARFVDNQQIYPLTYDNTWKGVVSVAGLSGDSLADF 485
Query: 462 GENWTSTENFCESY 503
G ++ + +F Y
Sbjct: 486 GNSYYNDHHFHYGY 499
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 7.5
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = +3
Query: 246 NRRKWTSSDFITNFTCVNLNGTLQVQSSNETCPEISDAERKQFVLKEQKVPGKCYPKIER 425
+R + S F+T+ NLNG ++V S + I A + +++ P + K E
Sbjct: 374 SRSGYFGSKFVTSVISGNLNGEIEVMSYQVS--NIGTALYQADLIQPSVDPDRMLVKKED 431
Query: 426 EACRVGDQIYQVGENW 473
+ V D +Y+ + +
Sbjct: 432 QTRYVPDVLYRYTDKY 447
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +1
Query: 10 RHQDNVYK-VGEKWKSPTDVCETYECAADGDGKLQRLA-AVQRSDRHCQP 153
RHQ + +K VGE W+ P + G + ++ + R+C P
Sbjct: 16 RHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 328 ELWTWRVPLRFTQVKFVMKSEDVHFRLLASPLHPP 224
E WT + +RF QVK + +S D F S ++PP
Sbjct: 279 EDWTSDLRIRFQQVKPIHES-DFSFVYHVSSINPP 312
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 318 VQSSNETCPEISDAERKQFVLKEQKV 395
VQS N+ EIS E ++F+L+E ++
Sbjct: 774 VQSFNDVSFEISKTEEERFLLQEYEL 799
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.130 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,285
Number of Sequences: 5004
Number of extensions: 40186
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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