Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS01026X
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0039 + 14023383-14023727 30 1.4
10_07_0189 + 13928680-13928848,13929005-13929267,13929365-13929985 29 2.5
03_06_0060 + 31341233-31342009,31342752-31342871,31343401-313435... 29 3.3
05_04_0130 - 18285430-18285951 28 4.4
03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534... 28 4.4
12_01_0698 - 5956944-5957075,5958714-5958734,5959177-5959302,595... 28 5.8
11_06_0611 + 25461469-25461655,25461670-25462238 28 5.8
09_01_0057 - 916973-917287,917371-917495,917587-918241 28 5.8
05_05_0327 + 24126075-24126453,24128037-24128431,24129009-24129656 28 5.8
03_02_0022 - 5054548-5054663,5054899-5055103,5055194-5055261,505... 28 5.8
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61... 27 7.7
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 27 7.7
05_05_0266 - 23694466-23696787,23696885-23697187 27 7.7
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 27 7.7
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235... 27 7.7
>09_04_0039 + 14023383-14023727
Length = 114
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 353 RYLRASLIRALDLEGAIEVHAGEVRDEVRGRPLSPIGFSSPSTTQAT 213
R+L L R L +GA+ A + E R R + I SSP +Q T
Sbjct: 35 RFLHHDLQRRLPCDGALHTTADDAMVETRSRTETCIASSSPPPSQPT 81
>10_07_0189 + 13928680-13928848,13929005-13929267,13929365-13929985
Length = 350
Score = 29.1 bits (62), Expect = 2.5
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -2
Query: 260 PLSPIGFSSPSTTQATGSH--LPQHWPLSASAGTYFQPGWQCRSLRCTAASRCSLPSPSA 87
P S +S +T A ++ PQ PL G Y+ S+ AS CS PSP A
Sbjct: 258 PFSFWASASAATPPAAANYHPSPQPQPLPPQGGEYYSRHGAF-SVAPVPASACSTPSPEA 316
Query: 86 AHSYVSHTS 60
A S + T+
Sbjct: 317 ATSCLLATT 325
>03_06_0060 +
31341233-31342009,31342752-31342871,31343401-31343517,
31343615-31343704,31344279-31344386,31345124-31345306
Length = 464
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 212 GSHLPQHWPLSASAGTYFQPGWQCRSLRCTAASR 111
G H Q WP+SA A F+ +SL C+ R
Sbjct: 13 GGHSQQRWPMSARAAHGFEGNPLTKSLDCSLDKR 46
>05_04_0130 - 18285430-18285951
Length = 173
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 426 HVRSWGSTSLGPSAPSARTASVQHPISPGKSHSSFGLGG 310
HVRSWG+ SL A SA A ++ G + +GG
Sbjct: 74 HVRSWGAHSLAAGAASALIAWAITALAFGLACKEIHIGG 112
>03_02_0061 +
5342338-5342401,5343025-5343131,5343962-5344009,
5344297-5344399,5345152-5345234,5345271-5346089,
5346189-5346338,5346420-5346797
Length = 583
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 242 FSSPSTTQATGSHLPQHWPL 183
+S P+ + T HLP +WPL
Sbjct: 50 YSGPNLPEVTCKHLPSYWPL 69
>12_01_0698 -
5956944-5957075,5958714-5958734,5959177-5959302,
5959448-5959730,5959970-5960244
Length = 278
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 231 WRGEANRRKWTSSDFITNFTCVNLNGTLQVQSSNETCP 344
W G + T + + C+NL L VQ+SN+ P
Sbjct: 56 WIGMLEEARGTGEEEVGLSACMNLKAYLMVQNSNDRSP 93
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = -2
Query: 287 EVRDEVRGRPLSPIGFSSPSTTQATGSHLPQHWPLSASAGTYFQPGWQCRSLRCTAASRC 108
E V G S PST+ ++ S LP WPL+ + + P + + R +AASR
Sbjct: 63 EAGGAVDGGGRSSSSSQPPSTSSSSLSQLPPPWPLAPACLSPPPPLPRAETGR-SAASRA 121
Query: 107 SLPSP 93
+ SP
Sbjct: 122 TAASP 126
>09_01_0057 - 916973-917287,917371-917495,917587-918241
Length = 364
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 272 LHHELHLREPQWHPPSPKLE*DLP 343
LH +LHL +P PP P L+ DLP
Sbjct: 29 LHLDLHLHQPP--PPPPLLDDDLP 50
>05_05_0327 + 24126075-24126453,24128037-24128431,24129009-24129656
Length = 473
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = -2
Query: 491 KVLGRRPVFADLVYLISHSTRLTFDLGVALPWDLLLLQHELLPFSIRYLRASLIR 327
K G + F D ++ + L+ D + L WD++ + S+ + A L+R
Sbjct: 227 KESGAKQHFVDALFTLREQYDLSDDTVIGLLWDMITAGMDTTVISVEWAMAELVR 281
>03_02_0022 -
5054548-5054663,5054899-5055103,5055194-5055261,
5055573-5055861,5056687-5056753,5057928-5057974
Length = 263
Score = 27.9 bits (59), Expect = 5.8
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +1
Query: 1 VACRHQDNVYKVGEKWKSPTDVCETYECAADGDGKLQR-LAAVQRSDRHCQPGWKY--VP 171
V R NV K+ + ++V Y C D DG L++ A R+ G KY V
Sbjct: 102 VDSREAKNVAKINQLLCWLSNVGVKYVCLYDIDGVLKKTFAPAMNGSRYGNSG-KYLDVG 160
Query: 172 AEADSGQCCGKCEPVACVVDGEEK 243
A + CC K + C+ + K
Sbjct: 161 ANTKALTCCHKEMTIECISGSDGK 184
>12_01_0072 +
609254-609722,610355-610421,610652-610745,610984-611127
Length = 257
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 269 RGRPLSPIGFSSPSTTQATGSHLPQHWPLSASAGTYFQPGWQCRSLRCTA 120
R RPL ++ ST A+ SH P P SA+ T C +LRC++
Sbjct: 51 RPRPLPSDTTAAASTCSASPSHTPVSKPSSATGETAAPQSNLC-ALRCSS 99
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = -2
Query: 233 PSTTQATGSHLPQHWPLSASAGTYFQPGWQCRSLRCTAASRCSLPSPSAAHSYVSHTSVG 54
P T QA LP ++ + G +Q R R T +R S P P++A + H
Sbjct: 374 PGTNQAATPSLPSQ-TIATTPG--YQGARLTRDSR-TRGARNSPPPPTSARRWRPHPPAD 429
Query: 53 DFH 45
DFH
Sbjct: 430 DFH 432
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -3
Query: 400 PGTFCSFSTNCFRSASDISGQVSFELWTWRVPLRFTQVKFVMKSEDVHFRLLASPLH 230
PG N F S ++ G VS + T P + + +ED H L+ P H
Sbjct: 543 PGGASDHIFNAFESYEEMVGGVSVQALTAVSPYQTMHEDVCVLAEDKHVSLIVLPFH 599
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 414 WGSTSLGPS-APSARTASVQHPISPGKSHSSFGLGG 310
W S+ PS +PS+ +AS P SP ++ +S GG
Sbjct: 3 WWKRSVSPSPSPSSSSASASTPASPARASTSRVGGG 38
>01_07_0126 -
41222916-41222942,41223120-41223190,41223478-41223560,
41223587-41223653,41223740-41223848,41224431-41224511,
41224671-41224940,41225035-41226510,41226832-41226908,
41227812-41227912,41229397-41229660,41230964-41231136
Length = 932
Score = 27.5 bits (58), Expect = 7.7
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = -2
Query: 293 AGEVRDEVRGRPLSPIGFSSPSTTQATGSHLPQHWPLSASAGTYFQPGWQCRSLRCTAAS 114
A ++ G P + +SP+ ++ P+ S S G QP +++ T++S
Sbjct: 8 ASSDEEDAGGEPPAAAA-ASPAPVPSSFGPRPRPPSPSTSVGAAPQPPPHSQNISSTSSS 66
Query: 113 RCSLPSPSAAHSYVSHTSVGDFHFSPTL 30
SLP+PS + V D SP+L
Sbjct: 67 NISLPTPS-----LDLPDVADLFSSPSL 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.130 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,235,798
Number of Sequences: 37544
Number of extensions: 338079
Number of successful extensions: 1440
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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