Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01025
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   134   4e-33
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   134   4e-33
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   0.60 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   2.4  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    26   2.4  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    26   2.4  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.3  
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    24   7.4  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    24   9.8  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    24   9.8  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  134 bits (325), Expect = 4e-33
 Identities = 62/87 (71%), Positives = 73/87 (83%)
 Frame = +1

Query: 1   VGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKY 180
           VGRRY+NIV KKADID+ KRAGE T EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK 
Sbjct: 36  VGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKS 95

Query: 181 SQLTSSNLDSKLREDLERLKKIRAQEG 261
            QL ++N+DSKLREDLERLKKI+   G
Sbjct: 96  FQLLANNVDSKLREDLERLKKIQTHRG 122



 Score = 27.5 bits (58), Expect = 0.80
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 255 RGMRHYWGLRVRGQH 299
           RG+RH   LRVRGQH
Sbjct: 121 RGLRHALDLRVRGQH 135


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  134 bits (325), Expect = 4e-33
 Identities = 62/87 (71%), Positives = 73/87 (83%)
 Frame = +1

Query: 1   VGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKY 180
           VGRRY+NIV KKADID+ KRAGE T EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK 
Sbjct: 36  VGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKS 95

Query: 181 SQLTSSNLDSKLREDLERLKKIRAQEG 261
            QL ++N+DSKLREDLERLKKI+   G
Sbjct: 96  FQLLANNVDSKLREDLERLKKIQTHRG 122



 Score = 27.5 bits (58), Expect = 0.80
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 255 RGMRHYWGLRVRGQH 299
           RG+RH   LRVRGQH
Sbjct: 121 RGLRHALDLRVRGQH 135


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 0.60
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 154  QKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAQEGCDITGAFVCVVSTLRLLAGEEELL 333
            ++ +VD  Y QLT   L   +    + +K+   +E C  +G +V  +S  +     E L 
Sbjct: 2117 EETLVDNLYHQLTLYQLQDLICSKCKTVKQWSLKERCSCSGEWVLQLSPTKF---REMLN 2173

Query: 334  VYQ 342
            VYQ
Sbjct: 2174 VYQ 2176


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 226 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 125
           N H  ++PS R S+  +Y    P  Y  ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +1

Query: 49  LDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDL 228
           L+  A   TEE    II+   N  QY IP+ F+  +K+ +     +  +S  +SK   D 
Sbjct: 105 LESNATAFTEELWSLIISASQN--QYGIPEKFILEKKEEISKLKDRTEASKEESKTVTDH 162

Query: 229 ERLKKIRAQ 255
              ++ R +
Sbjct: 163 SNRRESRRE 171


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 108 HDSDNFFNLFFCAFASTLVKINVGFFENNVGVPPAN 1
           +++D  F+ F C F+     +  G + NN G+ P +
Sbjct: 336 YENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTD 371


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 125 YCLGFDMIVIIFSTSSSVHSPARLSRSMSAFLRTMLEYLR 6
           YC  F  +  +   +  V+SP  ++  M+ F+R +L YL+
Sbjct: 58  YCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYLK 97


>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 43  IDLDKRAGECTEEEVEKIIT 102
           +DLDKR G  ++EE + +IT
Sbjct: 37  VDLDKRWGIMSQEEKDGLIT 56


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 226 LERLKKIRAQEGCDITGAFVC 288
           ++ ++K R +E CD+ G+ VC
Sbjct: 487 MQIIEKKRVREFCDLFGSLVC 507


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 103 IMSNPRQYKIPDWFLNRQKDIVDGKYSQ 186
           +  NPR + + ++ L     IV+ K+SQ
Sbjct: 583 LFRNPRNHLLLEYLLQAISSIVENKFSQ 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,286
Number of Sequences: 5004
Number of extensions: 25005
Number of successful extensions: 74
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)