Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS01025
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 131 2e-31
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 115 1e-26
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 113 4e-26
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 52 1e-07
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 27 5.5
03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084 27 5.5
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576... 27 5.5
01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490... 27 5.5
10_07_0109 + 12952293-12952952,12953049-12953402,12953494-129538... 27 7.2
06_03_0441 - 20820121-20820296,20820554-20820613,20820751-208208... 27 7.2
10_08_0578 - 18896759-18896866,18897708-18897785,18898244-188982... 26 9.6
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 26 9.6
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 131 bits (317), Expect = 2e-31
Identities = 56/87 (64%), Positives = 75/87 (86%)
Frame = +1
Query: 1 VGRRYSNIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKY 180
+GRR+SNI KKADID++KRAGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++
Sbjct: 32 IGRRFSNIACKKADIDMNKRAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRF 91
Query: 181 SQLTSSNLDSKLREDLERLKKIRAQEG 261
SQ+ S+ LD KLR+DLERLKKIR G
Sbjct: 92 SQVVSNALDMKLRDDLERLKKIRNHRG 118
Score = 39.1 bits (87), Expect = 0.001
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 255 RGMRHYWGLRVRGQH 299
RG+RHYWGLRVRGQH
Sbjct: 117 RGLRHYWGLRVRGQH 131
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 115 bits (277), Expect = 1e-26
Identities = 57/103 (55%), Positives = 75/103 (72%), Gaps = 16/103 (15%)
Frame = +1
Query: 1 VGRRYSNIVLKKADIDLDKR----------------AGECTEEEVEKIITIMSNPRQYKI 132
VGRR+SNI KKADID++KR AGE T EE+E+++T+++NPRQ+K+
Sbjct: 36 VGRRFSNIACKKADIDMNKRSGVVCYYLAVHNYVEWAGELTPEELERLMTVVANPRQFKV 95
Query: 133 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAQEG 261
PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR G
Sbjct: 96 PDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRG 138
Score = 39.1 bits (87), Expect = 0.001
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 255 RGMRHYWGLRVRGQH 299
RG+RHYWGLRVRGQH
Sbjct: 137 RGLRHYWGLRVRGQH 151
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 113 bits (273), Expect = 4e-26
Identities = 57/105 (54%), Positives = 75/105 (71%), Gaps = 18/105 (17%)
Frame = +1
Query: 1 VGRRYSNIVLKKADIDLDKR------------------AGECTEEEVEKIITIMSNPRQY 126
VGRR+SNI KKADID++KR AGE T EE+E+++T+++NPRQ+
Sbjct: 36 VGRRFSNIACKKADIDMNKRQEPPPPPSRRQISVMVGGAGELTPEELERLMTVVANPRQF 95
Query: 127 KIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAQEG 261
K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR G
Sbjct: 96 KVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRG 140
Score = 39.1 bits (87), Expect = 0.001
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 255 RGMRHYWGLRVRGQH 299
RG+RHYWGLRVRGQH
Sbjct: 139 RGLRHYWGLRVRGQH 153
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 52.4 bits (120), Expect = 1e-07
Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +1
Query: 139 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAQEG 261
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR G
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRG 48
Score = 39.1 bits (87), Expect = 0.001
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 255 RGMRHYWGLRVRGQH 299
RG+RHYWGLRVRGQH
Sbjct: 47 RGLRHYWGLRVRGQH 61
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 70 CTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGK-YSQLTSSNL 204
C EE ++ M P + + DW +N D+V+ + Y+++ + N+
Sbjct: 236 CNTEEDCALLASMLPPVEAALLDWAINLMADVVEHENYNKMNARNI 281
>03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084
Length = 156
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 149 FRNQSGILYCLGFDMIVIIFSTSSSVHSPARLS 51
F N YCLG +I ++++T+ RLS
Sbjct: 40 FDNYPEYTYCLGISIIAVLYTTAQVTRDVHRLS 72
>02_05_1211 +
34956601-34956850,34956950-34957102,34957562-34957674,
34958092-34958198,34958289-34958404,34958502-34958577,
34958652-34958693,34958809-34958917,34959102-34959199,
34959297-34959390,34959517-34959642
Length = 427
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +1
Query: 37 ADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDS-- 210
+ +DLD R+G T V K T+ NP + ++ + + KD Y +LT+ N ++
Sbjct: 190 SSVDLDIRSGSNTRHVVLKRQTVTLNPVRSRMCE--IPGAKDNSKVGYIKLTTFNQNAAG 247
Query: 211 KLREDLERLKK 243
++E L++L++
Sbjct: 248 SVKEALQKLRE 258
>01_06_0717 - 31446860-31447074,31447183-31447270,31448909-31449012,
31449618-31449745,31450461-31450555,31461823-31463115,
31463188-31464039,31464568-31464621
Length = 942
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 76 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLR-EDLERLKKIRA 252
E+ V +II ++ R + PD L +KD + L K R E++ERL+K R
Sbjct: 849 EKRVNEIINRLNKTRVERRPD--LKAEKDASNAAEKAERKMQLKEKRRREEMERLEKERR 906
Query: 253 QE 258
E
Sbjct: 907 AE 908
>10_07_0109 +
12952293-12952952,12953049-12953402,12953494-12953816,
12953939-12954062
Length = 486
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 181 SQLTSSNLDSKLREDLERLKKIRAQEGCDITGAFVCVVSTL 303
S++T DS L+ + R E C GA VC+ STL
Sbjct: 240 SEVTMFYADSMTNPHLKVVDVTRVAELCHRRGALVCIDSTL 280
>06_03_0441 -
20820121-20820296,20820554-20820613,20820751-20820859,
20820938-20821041,20821387-20822101,20822580-20822719,
20823342-20823672
Length = 544
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/59 (16%), Positives = 28/59 (47%)
Frame = +1
Query: 19 NIVLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTS 195
N +++ + + ++ ++ EKI + +P W L +K+ ++G+ + T+
Sbjct: 144 NRAIERYRLQTNNKSAAVANKDAEKISESSNWDNSVHLPVWVLETEKNAIEGRIEEWTT 202
>10_08_0578 -
18896759-18896866,18897708-18897785,18898244-18898285,
18898434-18898502,18898593-18898799,18898878-18898993,
18899532-18899586
Length = 224
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 211 KLREDLERLKKIRAQEGCDITGAFVCVVSTLRLLAG 318
KLRE+LE ++ +Q + AFV V+ L ++ G
Sbjct: 184 KLREELELARRQASQHQGGFSLAFVLVIGLLSIILG 219
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 262 CDITGAFVCVVSTLRLLAGEEELLVY 339
C+++ F+C +STL + ELL++
Sbjct: 195 CNLSFFFICYLSTLLIFCNANELLLF 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,227,362
Number of Sequences: 37544
Number of extensions: 162126
Number of successful extensions: 482
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -