Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS01024
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 31 0.21
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 29 0.48
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 28 1.5
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 2.5
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.4
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 4.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.4
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 4.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 4.4
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 5.9
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 26 5.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 5.9
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 26 5.9
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 7.8
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 7.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.8
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 7.8
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 347 SMDSIPSGNNRARTSTPVQVYKSMTYQSSS--TSNLSNGLFSNADDLSSVKGTSNS 508
S SI + TS+P V +++Y SSS +S+ N S++ D S GT+ S
Sbjct: 652 SSSSITGSQSLKETSSPAYVSSTVSYTSSSVDSSSTYNSTGSSSSDSQSFSGTTYS 707
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/79 (22%), Positives = 29/79 (36%)
Frame = +2
Query: 302 PEGMKHDSDNTREQPSMDSIPSGNNRARTSTPVQVYKSMTYQSSSTSNLSNGLFSNADDL 481
PE S + S +IPS S + SSSTS + + L
Sbjct: 981 PESSLSSSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSNPVKTVVSL 1040
Query: 482 SSVKGTSNS*KIIPHQKRT 538
S K T++ ++ + +T
Sbjct: 1041 ESYKFTTSKISLVKNPTKT 1059
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 29.5 bits (63), Expect = 0.48
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 392 LMYVLGCFHSECCPSKAVHGYCQNHVSYLQG 300
++Y LGCF+ EC K+ + H+ L G
Sbjct: 322 VLYFLGCFYEECVKPKSTWALLKPHLQLLIG 352
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +2
Query: 347 SMDSIPSGNNRARTSTPVQVYKSMTYQSSSTSNLSNGLFSNADDLSSVK 493
S +P+GN T Q +KSM Q S+ NL++ LF D S++K
Sbjct: 343 SSTGLPAGNVLNTYLTAAQFFKSM-LQFLSSKNLTSTLFKLNADSSNLK 390
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +2
Query: 341 QPSMDSIPSGNNRARTSTPVQVYKSMTYQSSSTSNLSNGLFSNA 472
Q S+ P G NR R+S+ +Q KS SS+TSN +NG +S +
Sbjct: 770 QRSVSPNPLGPNR-RSSSVLQSQKST---SSNTSNRNNGGYSGS 809
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 368 GNNRARTSTPVQVYKSMTYQSSSTSNLSNGLFSNADDLS 484
GNN+ S+P K+ T ++ S NG FSN + +S
Sbjct: 66 GNNKLLKSSP----KAQTRDENTPSEFKNGGFSNRESMS 100
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +2
Query: 311 MKHDSDNTREQPSMDSIPSGNNRARTSTPVQVYKSMTYQSSSTSNLSNGLFSNADDLSSV 490
++ SD + Q SMD + S N R + + S YQS N +G++S+ ++++ +
Sbjct: 58 LRPSSDASVSQFSMDYLQSEYNLNRYNDGESIAASRDYQSLLRDN-GSGVYSDEEEITEM 116
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +2
Query: 323 SDNTREQPSMDSIPSGNNRARTSTPVQVYKSMTYQSSSTSNLSNGLFSNADDLSS 487
S ++ P+ S ++ + +S+P +++ SSS+S+ S+ L S++ SS
Sbjct: 276 SSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSS 330
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +2
Query: 260 DDSEEFVSLFDTKIPEGMKHDS--DNTREQPSMDSIP--SGNNRARTSTPVQVYKSMTYQ 427
D +F+S F MK + + S ++IP S +N + TST Q Y +++
Sbjct: 153 DAFSQFISSFSPPEKPSMKDLALFHGNKSPSSKETIPKVSNSNSSDTSTDDQAYLNVSVS 212
Query: 428 SSSTSNLSNGLFSNADDLSSVKGTSN 505
+ ++ S S+A L+ K +++
Sbjct: 213 ENEHADRSIKTHSSAPPLNQQKSSTS 238
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 26.2 bits (55), Expect = 4.4
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +3
Query: 39 QFKIKSFNNHEIPALVTDSVSSILNSSKNTKQK-CVVPETSNVEQQTSLINSITVKDFLK 215
Q ++F N + L SS L + +Q+ C + SNV + L SIT D L
Sbjct: 1248 QTLFQTFQNPVVHYLDEAEASSSLKEEQLCRQEFCYGKDYSNVRKMLLLPKSITKVDVLG 1307
Query: 216 NELAKKITFTNKTTKMIQKNLYRCLTL 296
++ + F + T + + + LTL
Sbjct: 1308 SDFKEDSPFYHLTHVLEESDSQLDLTL 1334
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 5.9
Identities = 25/68 (36%), Positives = 33/68 (48%)
Frame = +2
Query: 335 REQPSMDSIPSGNNRARTSTPVQVYKSMTYQSSSTSNLSNGLFSNADDLSSVKGTSNS*K 514
RE S S S + RA STP KS + ++ TS LSN F++ SS S
Sbjct: 654 RETSSASSYRSYSQRA--STPAVTAKSSFHYATPTSGLSN--FNSVTPSSS---ASLYPP 706
Query: 515 IIPHQKRT 538
+IP + RT
Sbjct: 707 LIPSEART 714
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 159 SRFLVQHIFVSCFLTNLKWTTP 94
+R ++Q F+ CFL N K TP
Sbjct: 126 ARPIIQEFFLKCFLQNNKSVTP 147
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 5.9
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 251 DYKDDSEEFVSLFDTKIPEGMKHDSDNTREQPSMDSIPS---GNNRARTSTPVQVYKSMT 421
D +DDS S D++ E DSD+T DS S GN+ T+T +V +
Sbjct: 278 DSEDDSSSDSS--DSE-SESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEV----S 330
Query: 422 YQSSSTSNLSNGLFSNADDLSS 487
QSS+ S S S D+ SS
Sbjct: 331 AQSSTNSTSSEESTSVKDEDSS 352
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 501 RIPEKSFRIRKGRLTNSETKFEDEDE 578
RI + ++ IRKGR+ SE + E E E
Sbjct: 230 RILQLAYAIRKGRILTSEQRAERERE 255
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 39 QFKIKSFNNHEIPALVTDSVSSILNSSKNTKQ--KCVVPETSNVEQQTSL 182
+FK S NN++ +L+ D ++N+++ K+ K V+ +TS SL
Sbjct: 191 KFKWDSNNNNDWSSLMKDCFRDVVNNNRKMKEIIKDVMIDTSQAFPSESL 240
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 293 TKIPEGMKHDSDNTREQPSMDSI---PSGNNRARTSTPVQVYKSMTYQSSSTSNLS 451
+K+PE +K N + + SGN + ++ P QV T ++STS S
Sbjct: 510 SKVPENLKESHVNETPYRGLHDVNLPASGNASSVSAIPPQVSAQTTIPAASTSATS 565
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 7.8
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 329 NTREQPSMDSIPSGNNRARTSTPVQVYKSMTYQSSSTSNLSNGLFSNADDLSSVKGTSNS 508
+T + S SIP + RTST S++ SSST+ S S + S TS+S
Sbjct: 629 STSKVTSSTSIPLTSTN-RTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSSS 687
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 115 EFKMDDTESVTNAGISWLLKLFI 47
EF + ++ T ISWLL LF+
Sbjct: 272 EFNLASNKNTTIGTISWLLNLFV 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,007
Number of Sequences: 5004
Number of extensions: 53739
Number of successful extensions: 223
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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