Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01024
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0662 - 10250235-10250433,10250692-10253105                       29   3.5  
02_05_0250 + 27153048-27154453,27154546-27154885                       29   3.5  
01_01_0051 + 389051-389623                                             29   3.5  
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907...    29   4.6  
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083...    28   6.0  
02_01_0674 + 5020118-5020202,5020301-5020436,5021075-5021140,502...    28   8.0  

>03_02_0662 - 10250235-10250433,10250692-10253105
          Length = 870

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 66  HEIPALVTDSVSSILNSSKNTKQKCVVPETSNVEQQTSLINSITVKD-FLKNELAKK 233
           +E+   + ++ S IL   KN+K + +VP   N+ Q   L+    +KD  L+NE   K
Sbjct: 759 NELSRSIFEAYSGILQGFKNSKSELMVPYAGNIFQFVELV----LKDNLLRNESVTK 811


>02_05_0250 + 27153048-27154453,27154546-27154885
          Length = 581

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 72  IPALVTDSVSSILNSSKNTKQKCVVPETSNVEQQTSLINSITVKDFLKNEL 224
           +PA  +++V  ILNS  NT    V  + S V ++   I ++  +D  K  +
Sbjct: 293 VPASNSETVCPILNSDSNTNSDSVDVDPSFVAEKKGSIETVVTEDGKKQAM 343


>01_01_0051 + 389051-389623
          Length = 190

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = +2

Query: 293 TKIPEGMKHDSDNTREQPSMDSIPSGNNRARTSTPVQVYKSMTYQSSSTSNLSNGLFSNA 472
           T+ P G   D DN    P   +  S  +R R+S       S + +SSS+S+ S+   S++
Sbjct: 65  TQTPAG--EDEDNNATPPEAPAASSLKDRQRSSHGTDT--SSSSESSSSSSSSSSESSSS 120

Query: 473 DDLSSVKGTSNS 508
              SS + +S+S
Sbjct: 121 SSSSSSESSSSS 132


>02_05_1241 -
           35189111-35189389,35189604-35189711,35189982-35190713,
           35190811-35191230,35191484-35191565,35191719-35192002,
           35193104-35193256
          Length = 685

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +2

Query: 257 KDDSEEFVSLFDTKIPEGMKHDSDNTREQPSMDSIPSGNNRARTSTPVQVYKSMTYQSSS 436
           +DD   F S  D   P     D D T E+  M  I +G+    ++   + Y  +  Q   
Sbjct: 560 EDDYSVFGSEEDADDPPDAGTDEDLTDEERDMHEIEAGSVDEHSTKSDEEYDDLAMQDV- 618

Query: 437 TSNLSNGLFSNADD-LSSVKGTSNS*KII 520
              + NG +S+ +   SS K +SN  K I
Sbjct: 619 ---MENGYWSDDEQAASSTKNSSNQEKNI 644


>01_06_1580 -
           38406740-38407257,38407481-38407552,38408309-38408365,
           38408476-38408532,38408643-38408699,38408809-38408865,
           38409371-38409424,38409744-38409800,38410023-38410076,
           38412208-38412220,38413530-38413580,38414134-38414193,
           38414640-38414761,38415033-38415894,38416468-38416667,
           38417159-38417238,38417525-38417619
          Length = 821

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 371 FHSECCPSKAVHGYCQNHVSYLQGF*CQTTIQILLNHLCSL 249
           +H  CCPS +V G C   V + Q F  Q+  + L N+   L
Sbjct: 72  YHCLCCPSSSVCGECLGKVEFAQ-FRKQSQTKGLCNNCLKL 111


>02_01_0674 +
           5020118-5020202,5020301-5020436,5021075-5021140,
           5021219-5021290,5021362-5021433,5024242-5024301,
           5024494-5024565,5024655-5024720,5024798-5024863,
           5024945-5025273,5025713-5025969,5026213-5026484,
           5026580-5026715,5026833-5026972,5027051-5027207,
           5027476-5027634
          Length = 714

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 359 IPSGNNRARTSTPVQVYKSMTYQSSSTSNLSNGLFSNADDLSSVK 493
           I   NN    S P Q+  ++TY + +T+NLS  L  +  ++ S++
Sbjct: 74  IDLSNNNLHGSIPYQLPPNLTYLNLATNNLSGNLPYSISNMVSLE 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,012
Number of Sequences: 37544
Number of extensions: 288749
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)