Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS01023
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 56 4e-08
02_04_0035 + 19078267-19078479,19078588-19078674,19079792-190798... 35 0.083
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805... 32 0.44
02_04_0001 - 18816492-18816741,18816881-18817050,18817244-188173... 31 1.0
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 29 3.1
11_03_0060 - 9406273-9407142 29 4.1
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570... 29 5.4
11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610 28 7.2
03_05_0755 - 27462388-27463140 28 7.2
05_01_0338 + 2665412-2665564,2665647-2665766,2666344-2666397,266... 28 9.5
02_05_0153 - 26315923-26316024,26316173-26316267,26316737-263167... 28 9.5
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 28 9.5
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +1
Query: 619 FCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDR 726
FC+ VEPM +ESDH+HIIALS+AL V +RV Y+DR
Sbjct: 292 FCKASVEPMGEESDHVHIIALSDALGVPIRVMYLDR 327
Score = 51.2 bits (117), Expect = 9e-07
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = +2
Query: 254 HCFFRAFSYAYLERLLT--DKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETFMEVIQ 427
+CF+R+F ++YLE +L DK E ++ + + K L LG+ +FT EDF+ F++ ++
Sbjct: 156 NCFYRSFMFSYLEHILETQDKAEVERILKKIEQCKKTLADLGYIEFTFEDFFSIFIDQLE 215
Query: 428 RV 433
V
Sbjct: 216 SV 217
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 99 IEKEISETIPLVGEIEELQTLEKEYNE-DPIYLLKVKDLSSKYKSIRRTRPDG 254
+ K IS + +E L TL E+ PI K+K L +Y ++RRTR DG
Sbjct: 103 LNKFISVVSIFILWMEPLSTLAAEFQSGSPILQEKIKLLGEQYDALRRTRGDG 155
>02_04_0035 +
19078267-19078479,19078588-19078674,19079792-19079863,
19080338-19080526,19080599-19080718,19081348-19081430,
19081518-19081773,19081878-19082199,19086355-19086548,
19087135-19087227,19089327-19089497,19089580-19089699,
19090303-19090373,19090608-19090675,19091097-19091191
Length = 717
Score = 34.7 bits (76), Expect = 0.083
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +1
Query: 604 RTVTEFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRG--EGSQVIAHDFPRV 768
R++ ++C +V P +D + + AL+ AL+V +RV+ + G + S IA D PRV
Sbjct: 336 RSLEDWCSTQVIPPRVYADEVAVRALAAALQVFIRVEAPEYGGRQDSYYIARDRPRV 392
>04_04_1401 +
33279092-33279286,33280223-33280306,33280459-33280524,
33280945-33281028,33281181-33281246,33281719-33281802,
33281955-33282020,33282323-33282388,33282667-33282726,
33282805-33282888,33282968-33283111,33283552-33283586,
33283694-33283746,33283828-33283928,33284516-33284974
Length = 548
Score = 32.3 bits (70), Expect = 0.44
Identities = 9/29 (31%), Positives = 22/29 (75%)
Frame = +2
Query: 257 CFFRAFSYAYLERLLTDKQEYDKFYEIAK 343
CF+RAF ++Y+ER++ + + ++ E+++
Sbjct: 275 CFYRAFIFSYMERIVAMQDDLERIIEVSR 303
>02_04_0001 -
18816492-18816741,18816881-18817050,18817244-18817388,
18817495-18817565,18817910-18817993,18818103-18818222,
18818310-18818480,18818955-18819044,18821893-18821985,
18822073-18822405
Length = 508
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 616 EFCRQEVEPMYKESDHIHIIALSNALKVCVRVKYMDRGEGSQVIAHDFPRVYSA 777
++C +V P +DH+ + ALS AL V VRV+ G ++A + + A
Sbjct: 369 QWCSTQVIPPRVHADHVTMSALSRALGVAVRVEDTLDGRKKDLMAAELQSITRA 422
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -1
Query: 762 WKIMCYHLTTFTPIHVLHSDTHLEC---ITQCYDMDMVRLFVHRF 637
W +C H+++ P HV++S T L C + C +D R F R+
Sbjct: 688 WSKLCLHVSSSPPYHVVYS-TALLCFSFVAPCGALDAARPFAMRW 731
>11_03_0060 - 9406273-9407142
Length = 289
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +3
Query: 81 MKQQREIEKEISETIPLVGEIEELQTLEKE---YNEDPIYLLKVKDL 212
+K R E ISE +GE++ELQTLE + E P ++++K+L
Sbjct: 52 LKYLRLSEVSISELPEQIGELQELQTLELQRTSIKELPKSIVRLKNL 98
>03_02_0719 +
10654842-10654977,10655039-10655124,10655226-10657001,
10657782-10657926,10658017-10658735
Length = 953
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = -3
Query: 274 ERAKETMPSGRVRLMLLYFEDKSFTLSK*IGSSLYSFSKVCNSSISPTSG 125
+R +ET+PSGR+ L+ +D+ +S GSS YS C SS++ G
Sbjct: 61 KRGEETLPSGRLHLI---DDDEGIGVSSFKGSSDYS----CASSVTDEEG 103
>11_06_0741 - 26826931-26827022,26827660-26829470,26829772-26830610
Length = 913
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 159 LEKEYNEDPIYLLKVKDLSSKYKSIRRTRPDGIVSFARSHTH 284
L+KEYN+ +V L +++ + D ++S RS H
Sbjct: 21 LDKEYNKHKALEQEVASLQQEFRMVAAAMDDQLLSMGRSDAH 62
>03_05_0755 - 27462388-27463140
Length = 250
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 410 FMEVIQRVGEHAGSTPDLIETVRMELHDKFNKQDILIT*WCTFVLSHL 553
F E+ R+ E AG+ D + VR L D +D+L++ L+H+
Sbjct: 38 FRELTARLAEKAGAGGDAVTAVRYRLADGGLDEDLLVSVTSDEELAHM 85
>05_01_0338 +
2665412-2665564,2665647-2665766,2666344-2666397,
2666583-2666660,2667608-2667652,2668327-2668434,
2668629-2668706,2669352-2669457,2669622-2669680,
2670465-2670564,2670932-2671011,2671132-2671188,
2671321-2671424,2671799-2671886,2671971-2672056,
2672140-2672185,2672246-2672317,2672541-2672601,
2672692-2672936
Length = 579
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 695 LSALLNAMIWIWSDSLYIGSTSCLQNSVTVRG 600
L ++ N W ++ L +G CLQ+SVTV G
Sbjct: 162 LLSVENEEFWRGTEPLQLGRLPCLQDSVTVVG 193
>02_05_0153 -
26315923-26316024,26316173-26316267,26316737-26316784,
26316925-26317045,26317682-26317736,26317820-26317935,
26318479-26318547,26318909-26319018,26319985-26320069
Length = 266
Score = 27.9 bits (59), Expect = 9.5
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -3
Query: 430 SLDYFHKSFVKIFNGELRKP*GDKNIFRI-FCYFVKLIIFLLISQ*AFQICV*ERAKETM 254
+L YF K+F K F LRK GD+ I+ F I F+LI Q+ + K
Sbjct: 136 NLVYFSKNFPKSFQELLRKQNGDRAIWEYPFAVAGVNITFMLI-----QMLDLQSVKPRS 190
Query: 253 PSGRVRLMLLYFEDKSFTL 197
G V L LL D++F +
Sbjct: 191 FIGAVFLKLLSENDQAFDI 209
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 353 DILVALGFSQFTVEDFYETFMEVIQRVGEHAGSTPDLIETV 475
DI +A+G + E F E EVI+ + G PD++E V
Sbjct: 982 DIRLAMGAYYGSWEAFLEDVQEVIRNLHTAFGDRPDVLEMV 1022
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,079,369
Number of Sequences: 37544
Number of extensions: 405336
Number of successful extensions: 985
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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