Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01023
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81039-6|CAB02772.1|  284|Caenorhabditis elegans Hypothetical pr...    74   1e-13
U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z68161-11|CAA92300.1|  347|Caenorhabditis elegans Hypothetical p...    32   0.53 
Z68159-12|CAA92289.1|  347|Caenorhabditis elegans Hypothetical p...    32   0.53 
U52072-1|AAD11465.1|   97|Caenorhabditis elegans dauer-upregulat...    30   2.1  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    29   2.8  
U41009-1|AAA82278.3|  501|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    28   6.5  

>Z81039-6|CAB02772.1|  284|Caenorhabditis elegans Hypothetical
           protein C25D7.8 protein.
          Length = 284

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 33/73 (45%), Positives = 51/73 (69%)
 Frame = +1

Query: 508 GYSDYIVVYLRLITSGQLQTDQEFYQNFIEGPRTVTEFCRQEVEPMYKESDHIHIIALSN 687
           G ++YI+++ RLITS  L+ + E Y  FI+   TV ++C QE+EPM+K++DH+ I +L  
Sbjct: 164 GSANYILMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIK 223

Query: 688 ALKVCVRVKYMDR 726
           A    VR++YMDR
Sbjct: 224 AAGTRVRIEYMDR 236



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
 Frame = +2

Query: 254 HCFFRAFSYAYLERLLTDKQEYDKFYEIAKNSKDILVALGFSQFTVEDFYETFMEVIQRV 433
           +CF+RA     +E +L D+   +KF   +++    LV LGF  +T  DF + F+E ++++
Sbjct: 87  NCFYRAILVGLIEIMLKDRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEFLEKI 146

Query: 434 GEHAG-STPDLIETV 475
             H+G  T + + T+
Sbjct: 147 --HSGVHTEEAVYTI 159


>U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical
           protein F45F2.10 protein.
          Length = 980

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 20/68 (29%), Positives = 36/68 (52%)
 Frame = +3

Query: 6   ADDASSSSGITGNTVENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNEDP 185
           A  + SSS   G T +N+  Q +L  KQ++E+E++  E   + G    +   +KE  ++P
Sbjct: 155 AQPSCSSSKQNGKTAKNNFKQKQLTKKQRKELERKEFE---ISGAPAPIYPGQKERTKNP 211

Query: 186 IYLLKVKD 209
           I  +  K+
Sbjct: 212 IEYVVEKE 219


>Z68161-11|CAA92300.1|  347|Caenorhabditis elegans Hypothetical
           protein F20C5.6 protein.
          Length = 347

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 30  GITGNTVENSI-NQDELIMKQQREIEKEISETIPLVGEIEELQTLEKE 170
           G  G+ +  +I NQ+EL+ KQ  EIE+   E+  L+ + EE++ +  E
Sbjct: 68  GECGSELRATIKNQEELLKKQSEEIERCKEESRMLIQQKEEMENIHSE 115


>Z68159-12|CAA92289.1|  347|Caenorhabditis elegans Hypothetical
           protein F20C5.6 protein.
          Length = 347

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 30  GITGNTVENSI-NQDELIMKQQREIEKEISETIPLVGEIEELQTLEKE 170
           G  G+ +  +I NQ+EL+ KQ  EIE+   E+  L+ + EE++ +  E
Sbjct: 68  GECGSELRATIKNQEELLKKQSEEIERCKEESRMLIQQKEEMENIHSE 115


>U52072-1|AAD11465.1|   97|Caenorhabditis elegans dauer-upregulated
           protein 191 protein.
          Length = 97

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -3

Query: 412 KSFVKIFNGELRKP*GDKNIF----RIFCYFVKLIIFLLISQ*AF 290
           +S   + N E  KP G KNI+      FCYF  +I+F+  S   F
Sbjct: 27  QSICSVENVETEKPIGVKNIYIFCSFFFCYFCFVILFVFFSSPCF 71


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
            protein Y51A2D.15 protein.
          Length = 1222

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 63   NQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNED 182
            N++  I + ++++ ++ISE   L  +IE L  L + YNE+
Sbjct: 990  NKNNQIDELKKQLNQKISEVNKLSSKIEALSQLNRTYNEE 1029


>U41009-1|AAA82278.3|  501|Caenorhabditis elegans Hypothetical
           protein C06E7.2 protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 48  VENSINQDELIMKQQREIEKEISETIPLVGEIEELQTLEKEYNE 179
           + N I  DE+  +++ + EKE++E I  +   EE    EK+  E
Sbjct: 400 ISNEIPVDEISKEEEEKAEKELNEIIKELKSDEEAVDGEKDVGE 443


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 751 VLSPDYLHPDPCTSLGHTP 695
           VL P   H  PCT+ G+TP
Sbjct: 79  VLQPSQFHSPPCTTAGNTP 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,909,334
Number of Sequences: 27780
Number of extensions: 382053
Number of successful extensions: 1158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)