Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01020X
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    28   1.1  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    27   2.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   5.9  

>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 128 TGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVVP 238
           TG  +   +  +P+HN+  +++ PPY+  +   ++VP
Sbjct: 20  TGHEIDLEKGPLPEHNSEGESTLPPYSDISKLANLVP 56


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 125 STGAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVV 235
           S  AP++A R MMPQ +  ++ S P  + T  + SVV
Sbjct: 451 SKPAPVNASRPMMPQQSNNSEASIP--STTPQSPSVV 485


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 463 PRVSPGRSCSAPPSSNTEGLLGRSTVSS 546
           PR S G   + PP+++  GLLG S+ S+
Sbjct: 332 PRPSAGAGGANPPAASQPGLLGGSSNSA 359


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 248 WRCDRR*AARGHLARIFDAGPAGRR 322
           WR   R  ARGH+A +  AG  G R
Sbjct: 86  WRTGLREIARGHVAALVLAGGQGTR 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,158
Number of Sequences: 5004
Number of extensions: 27161
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)