Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01020X
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0599 + 19096054-19096875                                         29   2.0  
09_04_0377 + 17086775-17088310                                         28   6.0  
05_03_0569 - 15568538-15570049                                         28   6.0  
04_04_1406 + 33340509-33340681,33342737-33342839,33342931-333431...    28   6.0  
01_01_0990 + 7847066-7847478,7847713-7848679                           28   6.0  
04_04_0711 - 27468045-27468264,27468831-27468935,27469431-274694...    27   7.9  

>10_08_0599 + 19096054-19096875
          Length = 273

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 291 RARCPLAAYLRSHLHAIAGTTLCASVVMV*GGGEVCAVALCCGIMSRQALSGAPVERASD 112
           R  C LAA +R   HA+  T   AS       GEV  +      ++  A     +  A+ 
Sbjct: 146 RELCRLAAAMR---HAVRRTPAAASRTANDADGEVVGIVAEAAAVTAAASEAILLRCAAM 202

Query: 111 TRDVITNITTAA-HKHAY 61
           +RDV   + TAA HK A+
Sbjct: 203 SRDVPAMVQTAASHKWAW 220


>09_04_0377 + 17086775-17088310
          Length = 511

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +2

Query: 77  AAVVMLVMTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPPYTITTD 220
           A+VV L   SRVS + S     S  R   P+ N     SP PY    D
Sbjct: 9   ASVVHLPGRSRVSASPSPRRRRSPSRSPSPRRNRRRDRSPSPYRSRRD 56


>05_03_0569 - 15568538-15570049
          Length = 503

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 8   PRGLVYVQISEEGSIMKVYACLCAAVVMLVMTSRVSEARSTGA 136
           PRG+  +Q    GS ++V A  CA +V L     +  A +T A
Sbjct: 294 PRGITLLQRLGVGSALQVAAVACACLVELRRMRAIRAASATAA 336


>04_04_1406 +
           33340509-33340681,33342737-33342839,33342931-33343156,
           33343270-33343327,33343639-33343729
          Length = 216

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = +2

Query: 77  AAVVMLVMTSRVSEARST--GAPLSACRDMMPQHNATAQTSPPPYTITTDAQSVVPAIAW 250
           A  +ML+  +  + A +T   A ++    +MP  NAT     P  T +   QS   ++A 
Sbjct: 93  AQAIMLIAAAAAAAASATKSNAAIAVKPPVMPAANATQAAVSPVLTRSLSLQST--SVAT 150

Query: 251 RCDRR*AARGHLARIFDAGPAGRRHP-RDFLARGRRRLLS 367
              +  A    + ++    P  RRH  + FL + R RL+S
Sbjct: 151 GQPQVAADPSSICKLQADLPIARRHSLQRFLEKRRDRLVS 190


>01_01_0990 + 7847066-7847478,7847713-7848679
          Length = 459

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 281 HLARIFDAGPAGRRHPRDFLARGRRRLLSA 370
           H A + DAG  GR   RDFL  G + L S+
Sbjct: 424 HHAGLKDAGGVGREETRDFLGVGVQALCSS 453


>04_04_0711 -
           27468045-27468264,27468831-27468935,27469431-27469489,
           27469566-27470009,27470123-27470187,27470871-27471066,
           27471429-27471590
          Length = 416

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 122 RSTGAPLSACRDMMPQHNA--TAQTSPPPYTITTDAQSV 232
           R+   P + C  + P H+   +A + PPP +I+  A++V
Sbjct: 18  RNHATPAATCAALAPAHHGHLSASSPPPPSSISAAARAV 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,977,654
Number of Sequences: 37544
Number of extensions: 252330
Number of successful extensions: 1081
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)