Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01020X
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    32   0.25 
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    27   7.1  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   7.1  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   7.1  
U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +3

Query: 282 TLRGYLMQARQGDDI-LGTFSLEDGDVFSQLINCGKPGNAVPHKKHDNKEDKRQVRVRWS 458
           T RG+++ +   D+   G++ +  G   +++     PG       H N + K  V + W 
Sbjct: 84  TFRGFVVSSLFEDNTSAGSWQVVKGHGDARI----SPGCRQSGVSHANLKSKTSVHMMWK 139

Query: 459 PPQGLTGEVVFRATIVK 509
            P+  +G VVFRA++++
Sbjct: 140 APEVSSGCVVFRASVIE 156


>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical
           protein F43D9.1 protein.
          Length = 1226

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 307 ACIKYPRKVSSGSLPAITPP 248
           A +++ RKVS+GS P + PP
Sbjct: 20  AAVRFQRKVSTGSAPTVPPP 39


>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical
           protein F43D9.1 protein.
          Length = 1226

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 307 ACIKYPRKVSSGSLPAITPP 248
           A +++ RKVS+GS P + PP
Sbjct: 20  AAVRFQRKVSTGSAPTVPPP 39


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = +3

Query: 282  TLRGYLMQARQGDDILGTFSLEDGDVFSQLINCGKPGNAVPHKKHDNKEDKRQVRVRWSP 461
            T R  L QAR  D   GT  ++D  VF  ++N  KPG+A P       +   +V + W P
Sbjct: 902  TKRILLCQARNPD---GT--VDDRHVF--IVN--KPGSA-PQNPEVIVDPDNRVTITWQP 951

Query: 462  PQGLTGEV 485
            P+   GE+
Sbjct: 952  PKYPNGEI 959


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = +3

Query: 282  TLRGYLMQARQGDDILGTFSLEDGDVFSQLINCGKPGNAVPHKKHDNKEDKRQVRVRWSP 461
            T R  L QAR  D   GT  ++D  VF  ++N  KPG+A P       +   +V + W P
Sbjct: 965  TKRILLCQARNPD---GT--VDDRHVF--IVN--KPGSA-PQNPEVIVDPDNRVTITWQP 1014

Query: 462  PQGLTGEV 485
            P+   GE+
Sbjct: 1015 PKYPNGEI 1022


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = +3

Query: 282  TLRGYLMQARQGDDILGTFSLEDGDVFSQLINCGKPGNAVPHKKHDNKEDKRQVRVRWSP 461
            T R  L QAR  D   GT  ++D  VF  ++N  KPG+A P       +   +V + W P
Sbjct: 965  TKRILLCQARNPD---GT--VDDRHVF--IVN--KPGSA-PQNPEVIVDPDNRVTITWQP 1014

Query: 462  PQGLTGEV 485
            P+   GE+
Sbjct: 1015 PKYPNGEI 1022


>U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical
           protein T02G5.7 protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 327 GCRLPAGPASNIRARCPLAAYLRSHLHAIAGTTLCAS 217
           GC LPAG   N+  +  L+A L     A+    +C+S
Sbjct: 56  GCVLPAGLGQNVTRQISLSAGLPVTTQAVTVNKVCSS 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,600,831
Number of Sequences: 27780
Number of extensions: 180230
Number of successful extensions: 696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)