Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01020X
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.93 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +2

Query: 152  RDMMPQHNATAQTSPPPYTITTDAQSVVPAIAWRCDRR*AARGHLARIFD 301
            + MMP   +T ++S    T  +   + V   A  CD+  A + H+    D
Sbjct: 915  QSMMPTRYSTTKSSAVTATNASSMIAPVALTAATCDQNKAVKKHITTTID 964


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 98   MTSRVSEARSTGAPLSACRDMMPQHNATAQTSPPP 202
            +T   +E   +G P S   D + QH       PPP
Sbjct: 967  VTIITAEEAPSGPPTSIRVDDLDQHTLKVTWKPPP 1001


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,540
Number of Sequences: 438
Number of extensions: 2033
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)