Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01018
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    37   0.002
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    31   0.12 
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    30   0.29 
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   2.7  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   6.1  
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    25   8.1  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 17/34 (50%), Positives = 25/34 (73%)
 Frame = -2

Query: 683 ISEDSYQSRIVWKGLPQGSVLSPLLYNIYSHDLE 582
           ++E+ Y+  IV  G PQGS++SP+L NIY H L+
Sbjct: 409 LTENRYKYDIV--GTPQGSIVSPILANIYLHQLD 440


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -2

Query: 707 LSGRMLKVISEDSYQSRIVWKGLPQGSVLSPLLYNIYSHDL 585
           LSG ++K I    Y  ++   G+PQGS+LS  L + Y  DL
Sbjct: 686 LSGHIVK-IGNSQYLQKV---GIPQGSILSSFLCHFYMEDL 722


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 181 LYKSFREKGWAPHQTPERQRNIF-RISHIYHLYSSNEG 291
           LY++FRE  W+  + P+  ++++  +  +YH ++S+ G
Sbjct: 199 LYQNFRENWWSNIKLPQNLKSLYVELCLVYHFHNSHLG 236


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 182 NALIRSILDYGTFILEPCNAVALHKLDIIQSKALRI 75
           NAL++ I  Y     E  +A+A   L+ I+SKALR+
Sbjct: 200 NALMKVIAGYDEENTEDYSALAAADLESIRSKALRV 235


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 364 NNIRVPVKSEATFLGVILDSRLTGSPHCYYISDKCEK 254
           N+ ++ VKSE        D  LT SP+ Y+ S   E+
Sbjct: 43  NSFKLLVKSEGNNQSTTADVTLTKSPNAYHASSAREE 79


>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 184 YKSFREKGWAPHQTPERQRNIFRISHIYHLYSSNE 288
           YK+ R + +    + ER+R   + SH+  LY  +E
Sbjct: 50  YKNVRPEEYIKKGSGERKRKFSKKSHLQELYERSE 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,333
Number of Sequences: 5004
Number of extensions: 61235
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)