Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01018
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253...    30   2.1  
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     29   3.7  
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173...    29   3.7  
01_01_0361 + 2838979-2841745,2841897-2842285                           29   3.7  
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    29   4.8  
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709...    29   4.8  
06_01_0689 + 5028932-5031013                                           28   6.4  
05_06_0183 - 26182481-26182897,26183005-26183163,26183261-261837...    28   6.4  
05_06_0243 - 26639497-26641173                                         28   8.5  

>11_06_0442 -
           23622633-23623000,23623149-23623721,23624795-23625335,
           23625807-23625982,23626081-23626804
          Length = 793

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 493 TVTYSLKLLKVWLDNNSLSLSVPKSIIVLFSRMRLPPSV 377
           ++T   +L  +WLD N L   +P SI  L   +++P S+
Sbjct: 267 SLTNCTQLTNLWLDRNKLQGIIPSSITNLSEGLKIPTSL 305


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -3

Query: 475 KLLKVWLDNNSLSLSVPKSIIVLFSRMRLPPSVSVFYNNIRVPVKSEATFLGVILD-SRL 299
           KL  + L NN LS +VP SI  L S ++L  S + F + + V + +      + L  +R 
Sbjct: 565 KLEHLVLSNNQLSSTVPPSIFHLSSLIQLDLSHNFFSDVLPVDIGNMKQINNIDLSTNRF 624

Query: 298 TGS 290
           TGS
Sbjct: 625 TGS 627


>10_08_0410 -
           17716370-17716743,17716839-17716939,17717104-17717300,
           17717392-17717677,17717768-17718004,17718226-17718281,
           17720042-17721226
          Length = 811

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -2

Query: 215 GAHPFSLKLLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRII----AGAMRSSP 48
           G HP+SL  + N ++RS       I +P  + +  +L+++Q K   ++      A RSSP
Sbjct: 552 GGHPYSLATIRNGILRSNRRQPYTIAKPFGS-SDKRLELVQGKVNPLVHFGLCDATRSSP 610

Query: 47  I 45
           I
Sbjct: 611 I 611


>01_01_0361 + 2838979-2841745,2841897-2842285
          Length = 1051

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 499 SDTVTYSLKLLKVWLDNNSLSLSVPKSI 416
           +  V  S  L K++LDNNS+S S+P+ I
Sbjct: 366 NSVVNLSTTLHKLYLDNNSISGSIPEDI 393


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 644 GLPQGSVLSPLLYNIYSHDLEASLRGKVTHSN 549
           G+ QGS LSP L ++Y   LE S+  K  H +
Sbjct: 382 GIAQGSKLSPNLCSLYYGHLENSVLSKFLHDS 413


>01_05_0154 +
           18667338-18670110,18670233-18670561,18670914-18670939,
           18671678-18671783
          Length = 1077

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
 Frame = -3

Query: 523 LW*FYDNMSDTVTYSL----KLLKVWLDNNSLSLSVPKSI 416
           LW   +NMS  + +S+    +LL + L NN L+ S+PKS+
Sbjct: 427 LWLNMNNMSGGIPFSIGNLTQLLTLDLSNNQLNGSIPKSL 466


>06_01_0689 + 5028932-5031013
          Length = 693

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 472 LLKVWLDNNSLSLSVPKSIIVLFSRMRL 389
           L K+WLD+N LS ++P SI    S + L
Sbjct: 152 LKKLWLDHNELSGAIPASIAQATSLLEL 179


>05_06_0183 -
           26182481-26182897,26183005-26183163,26183261-26183714,
           26184370-26184485
          Length = 381

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 534 VNHLHIGVCYFTPKGGFQIMR 596
           + H+H+  C F P GG + +R
Sbjct: 44  IKHIHLSYCAFRPTGGLKFLR 64


>05_06_0243 - 26639497-26641173
          Length = 558

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -2

Query: 143 ILEPCNAVALHKLDIIQSKALR 78
           I+E C+A+ALH L +++S A+R
Sbjct: 320 IVEFCSAIALHSLGMLESIAIR 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,468,362
Number of Sequences: 37544
Number of extensions: 357572
Number of successful extensions: 822
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)