Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS01018
(714 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 51 2e-06
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 41 0.002
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 41 0.002
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 41 0.002
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 41 0.002
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 40 0.003
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 40 0.003
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 40 0.003
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 39 0.006
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 39 0.006
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 38 0.010
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 38 0.010
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 37 0.024
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 37 0.031
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 37 0.031
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 37 0.031
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 37 0.031
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 37 0.031
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 37 0.031
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 37 0.031
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 36 0.072
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 35 0.096
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 33 0.29
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 32 0.67
AY089478-1|AAL90216.1| 281|Drosophila melanogaster AT29119p pro... 30 2.7
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 30 2.7
AE014134-2840|AAN10988.1| 281|Drosophila melanogaster CG31803-P... 30 2.7
U14102-1|AAC46495.1| 299|Drosophila melanogaster putative rever... 30 3.6
BT030123-1|ABN49262.1| 1211|Drosophila melanogaster IP13783p pro... 29 8.3
AE014296-1508|AAF50376.2| 1211|Drosophila melanogaster CG6511-PA... 29 8.3
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 50.8 bits (116), Expect = 2e-06
Identities = 28/83 (33%), Positives = 46/83 (55%)
Frame = -2
Query: 251 LNILRCLSGVWWGAHPFSLKLLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRII 72
LNI++CLS + + + +L + A I + L+YG F+ L+K+ + A+R+
Sbjct: 765 LNIIKCLSSLKFNCNTHTLLNVAKATIIAKLEYGLFLYGHAPKSILNKIKTPFNSAIRLA 824
Query: 71 AGAMRSSPINALQVECSEAPLHL 3
GA RS+PIN L E + PL +
Sbjct: 825 LGAYRSTPINNLLYESNTPPLEM 847
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -2
Query: 713 NLLSGRMLKVISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
N LS R V + SRI + G+PQGS+L P+LY+IYS D+
Sbjct: 216 NYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDM 260
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -2
Query: 713 NLLSGRMLKVISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
N LS R V + SRI + G+PQGS+L P+LY+IYS D+
Sbjct: 663 NYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDM 707
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -2
Query: 713 NLLSGRMLKVISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
N LS R V + SRI + G+PQGS+L P+LY+IYS D+
Sbjct: 663 NYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDM 707
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 40.7 bits (91), Expect = 0.002
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -2
Query: 713 NLLSGRMLKVISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
N LS R V + SRI + G+PQGS+L P+LY+IYS D+
Sbjct: 663 NYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDM 707
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 40.3 bits (90), Expect = 0.003
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -2
Query: 713 NLLSGRMLKVISEDSYQSR-IVWKGLPQGSVLSPLLYNIYSHDL 585
N L+ R V S +R I+ G+PQGSVL P L+NI++HD+
Sbjct: 641 NFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDI 684
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 40.3 bits (90), Expect = 0.003
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -2
Query: 713 NLLSGRMLKVISEDSYQSR-IVWKGLPQGSVLSPLLYNIYSHDL 585
N L+ R V S +R I+ G+PQGSVL P L+NI++HD+
Sbjct: 589 NFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDI 632
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 39.9 bits (89), Expect = 0.003
Identities = 19/30 (63%), Positives = 23/30 (76%), Gaps = 3/30 (10%)
Frame = -2
Query: 644 GLPQGSVLSPLLYNIYSHDL---EASLRGK 564
G+PQGSVL PLLY +YSHD+ + SL GK
Sbjct: 639 GVPQGSVLGPLLYCLYSHDMPQPDVSLYGK 668
Score = 37.1 bits (82), Expect = 0.024
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -3
Query: 460 WLDNNSLSLSVPKSIIVLFS-RMRLPPSVSVFYNNIRVPVKSEATFLGVILDSRLTGSPH 284
W ++ ++ KS V F+ + R PP V + + VP + A +LGV+LD RLT S H
Sbjct: 704 WARRWNIGINSSKSNNVCFTLKRRTPPPV--YIEEVPVPQPNAAKYLGVLLDRRLTFSKH 761
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 39.1 bits (87), Expect = 0.006
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -3
Query: 460 WLDNNSLSLSVPKSIIVLFS--RMRLPPSVSVFYNNIRVPVKSEATFLGVILDSRLTGSP 287
WL + +S++V K V F+ + PP V NNI +P E T+LGV LD RLT
Sbjct: 695 WLADWRISINVQKCKQVTFTLNKQTCPPLV---LNNICIPQADEVTYLGVHLDRRLTWRK 751
Query: 286 H 284
H
Sbjct: 752 H 752
Score = 32.7 bits (71), Expect = 0.51
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -2
Query: 644 GLPQGSVLSPLLYNIYSHD 588
G+PQGSVL P+LY +Y+ D
Sbjct: 635 GVPQGSVLGPILYTLYTAD 653
Score = 29.9 bits (64), Expect = 3.6
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -2
Query: 206 PFSLK---LLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRIIAGA 63
P SL+ LLYN++++ I YG+ + + + + QS+ LRII GA
Sbjct: 776 PLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGA 826
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 39.1 bits (87), Expect = 0.006
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -3
Query: 460 WLDNNSLSLSVPKSIIVLFS--RMRLPPSVSVFYNNIRVPVKSEATFLGVILDSRLTGSP 287
WL + +S++V K V F+ + PP V NNI +P E T+LGV LD RLT
Sbjct: 695 WLADWRISINVQKCKQVTFTLNKQTCPPLV---LNNICIPQADEVTYLGVHLDRRLTWRK 751
Query: 286 H 284
H
Sbjct: 752 H 752
Score = 32.7 bits (71), Expect = 0.51
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -2
Query: 644 GLPQGSVLSPLLYNIYSHD 588
G+PQGSVL P+LY +Y+ D
Sbjct: 635 GVPQGSVLGPILYTLYTAD 653
Score = 29.9 bits (64), Expect = 3.6
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -2
Query: 206 PFSLK---LLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRIIAGA 63
P SL+ LLYN++++ I YG+ + + + + QS+ LRII GA
Sbjct: 776 PLSLEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGA 826
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 38.3 bits (85), Expect = 0.010
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -2
Query: 707 LSGRMLKVISEDSYQ-SRIVWKGLPQGSVLSPLLYNIYSHDL 585
L R V +SY R++ G+PQGSVL PLLY++++ DL
Sbjct: 618 LEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADL 659
Score = 35.1 bits (77), Expect = 0.096
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 478 LKLLKVWLDNNSLSLSVPKSIIVLFSRMRLPP-SVSVFYNNIRVPVKSEATFLGVILDSR 302
L L W L ++ K+I F+ L P + + + + S+A +LG+ LD R
Sbjct: 702 LTTLAAWCKRWILKVNPQKTINPCFTLKTLSPVTAPIELEGVILDQPSQAKYLGITLDKR 761
Query: 301 LTGSPHCYYISDKC 260
LT PH + +C
Sbjct: 762 LTFGPHLKATTRRC 775
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 38.3 bits (85), Expect = 0.010
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = -2
Query: 713 NLLSGRMLKVISEDSYQSRIVWKGLPQGSVLSPLLYNI 600
N R+L ++ED +S V G+PQGSVL P+L+NI
Sbjct: 589 NYFRDRVLWYVTEDGPRSHQVSAGVPQGSVLGPILWNI 626
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 37.1 bits (82), Expect = 0.024
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = -3
Query: 478 LKLLKVWLDNNSLSLSVPKSIIVLFS-RMRLPPSVSVFYNNIRV-PVKSEATFLGVILDS 305
LK W D +S++ K+ V+F+ + LP S+ +V ++S+ ++LGVILDS
Sbjct: 747 LKSFSDWADKWGISVNAAKTGHVIFTLKNDLPTSLRTMKIKGQVIKIESKQSYLGVILDS 806
Query: 304 RLTGSPH 284
+LT S H
Sbjct: 807 KLTLSSH 813
Score = 33.9 bits (74), Expect = 0.22
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -2
Query: 707 LSGRMLKVISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
L+ R +V + SR + G+PQGS L PLLY+I+S D+
Sbjct: 662 LTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDM 704
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 36.7 bits (81), Expect = 0.031
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = -3
Query: 478 LKLLKVWLDNNSLSLSVPKSIIVLFS-RMRLPPSVSVF-YNNIRVPVKSEATFLGVILDS 305
LK W D +S++ K+ V+++ + +P ++ + +S+ ++LGVILDS
Sbjct: 631 LKTFSDWADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDS 690
Query: 304 RLTGSPH 284
+LT SPH
Sbjct: 691 KLTLSPH 697
Score = 33.1 bits (72), Expect = 0.39
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -2
Query: 707 LSGRMLKVISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
L+ R +V + SR + G+PQGS L P+LY+I+S D+
Sbjct: 546 LTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDM 588
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 36.7 bits (81), Expect = 0.031
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Frame = -2
Query: 683 ISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
+S D Y+S I + G+PQGSVL P LY++++ D+
Sbjct: 626 VSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDM 660
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.7 bits (81), Expect = 0.031
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = -3
Query: 478 LKLLKVWLDNNSLSLSVPKSIIVLFS-RMRLPPSVSVF-YNNIRVPVKSEATFLGVILDS 305
LK W D +S++ K+ V+++ + +P ++ + +S+ ++LGVILDS
Sbjct: 747 LKTFSDWADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDS 806
Query: 304 RLTGSPH 284
+LT SPH
Sbjct: 807 KLTLSPH 813
Score = 33.1 bits (72), Expect = 0.39
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -2
Query: 707 LSGRMLKVISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
L+ R +V + SR + G+PQGS L P+LY+I+S D+
Sbjct: 662 LTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDM 704
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 36.7 bits (81), Expect = 0.031
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Frame = -2
Query: 683 ISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
+S D Y+S I + G+PQGSVL P LY++++ D+
Sbjct: 428 VSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDM 462
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.7 bits (81), Expect = 0.031
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = -3
Query: 478 LKLLKVWLDNNSLSLSVPKSIIVLFS-RMRLPPSVSVF-YNNIRVPVKSEATFLGVILDS 305
LK W D +S++ K+ V+++ + +P ++ + +S+ ++LGVILDS
Sbjct: 747 LKTFSDWADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDS 806
Query: 304 RLTGSPH 284
+LT SPH
Sbjct: 807 KLTLSPH 813
Score = 33.1 bits (72), Expect = 0.39
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -2
Query: 707 LSGRMLKVISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
L+ R +V + SR + G+PQGS L P+LY+I+S D+
Sbjct: 662 LTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDM 704
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 36.7 bits (81), Expect = 0.031
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = -3
Query: 478 LKLLKVWLDNNSLSLSVPKSIIVLFS-RMRLPPSVSVF-YNNIRVPVKSEATFLGVILDS 305
LK W D +S++ K+ V+++ + +P ++ + +S+ ++LGVILDS
Sbjct: 709 LKTFSDWADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDS 768
Query: 304 RLTGSPH 284
+LT SPH
Sbjct: 769 KLTLSPH 775
Score = 33.1 bits (72), Expect = 0.39
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -2
Query: 707 LSGRMLKVISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
L+ R +V + SR + G+PQGS L P+LY+I+S D+
Sbjct: 624 LTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDM 666
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.7 bits (81), Expect = 0.031
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = -3
Query: 478 LKLLKVWLDNNSLSLSVPKSIIVLFS-RMRLPPSVSVF-YNNIRVPVKSEATFLGVILDS 305
LK W D +S++ K+ V+++ + +P ++ + +S+ ++LGVILDS
Sbjct: 747 LKTFSDWADKWGISVNAAKTGHVIYTLKNDIPTNLKTMKIKGQAIKKESKQSYLGVILDS 806
Query: 304 RLTGSPH 284
+LT SPH
Sbjct: 807 KLTLSPH 813
Score = 33.1 bits (72), Expect = 0.39
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -2
Query: 707 LSGRMLKVISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
L+ R +V + SR + G+PQGS L P+LY+I+S D+
Sbjct: 662 LTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDM 704
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 35.5 bits (78), Expect = 0.072
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = -3
Query: 478 LKLLKVWLDNNSLSLSVPKSIIVLFS-RMRLPP-SVSVFYNNIRVPVKSEATFLGVILDS 305
LK W D +S++ K+ V+F+ + LP S++V + +S+ ++LGV LDS
Sbjct: 759 LKTFSDWADKWGISVNAAKTGHVIFTLKNDLPTNSMNVKIKGQTIKKESKQSYLGVTLDS 818
Query: 304 RLTGSPH 284
+LT S H
Sbjct: 819 KLTLSSH 825
Score = 33.9 bits (74), Expect = 0.22
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -2
Query: 707 LSGRMLKVISEDSYQSRI--VWKGLPQGSVLSPLLYNIYSHDL 585
L+ R +V + SR + G+PQGS L PLLY+I+S D+
Sbjct: 674 LTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDM 716
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 35.1 bits (77), Expect = 0.096
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -3
Query: 469 LKVWLDNNSLSLSVPKSIIVLFS--RMRLPPSVSVFYNNIRVPVKSEATFLGVILDSRLT 296
+K WL + + ++ K V F+ R PP + N+I +P E T+LGV LD RLT
Sbjct: 694 IKKWLSDWRIKVNEQKCKHVTFTLNRQDCPP---LLLNSIPLPKADEVTYLGVHLDRRLT 750
Query: 295 GSPH 284
H
Sbjct: 751 WRRH 754
Score = 33.1 bits (72), Expect = 0.39
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2
Query: 644 GLPQGSVLSPLLYNIYSHDLEASLR 570
G+PQGSVL P LY IY+ D+ + R
Sbjct: 637 GVPQGSVLGPTLYLIYTADIPTNSR 661
Score = 28.7 bits (61), Expect = 8.3
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 191 LLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRIIAGA 63
LLYN++++ I YG+ + + + + QSK LR I GA
Sbjct: 786 LLYNSILKPIWTYGSQLWGNASNSNIDIIQRAQSKILRTITGA 828
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.29
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 644 GLPQGSVLSPLLYNIYSHDL 585
G+PQGSVL P+LY +Y+ D+
Sbjct: 176 GVPQGSVLGPILYTLYTADI 195
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 32.3 bits (70), Expect = 0.67
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 704 SGRMLKVISEDSYQSRIVWKGLPQGSVLSPLLYN-IYSHDLEASLRGK 564
S R+L S + V G+PQGSVL PLL+N +Y L L G+
Sbjct: 30 SNRVLPCESSEGVFRHQVTGGVPQGSVLGPLLWNTMYDGILRLPLVGR 77
>AY089478-1|AAL90216.1| 281|Drosophila melanogaster AT29119p
protein.
Length = 281
Score = 30.3 bits (65), Expect = 2.7
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = -3
Query: 412 VLFSRMRLPPSVSVFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYIS 269
+++ M+L P + N + ++++ F G+ L R+T + + YYI+
Sbjct: 13 LMYCGMKLSPEQRILIENSLIALQNDNRFTGMYLWGRITATKNDYYIA 60
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 30.3 bits (65), Expect = 2.7
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = -2
Query: 248 NILRCLSGVWWGAHPFSLKLLYNALIRSILDYGTFILEPCNAVALHKLDIIQSKALRIIA 69
NI++ LS + H +L + AL+ S +DYG I C L KL + A+R
Sbjct: 775 NIIKFLSSKYSYIHIKTLIDITRALMLSKIDYGLPIFGWCAKSHLKKLQVPYHGAVRRAI 834
Query: 68 GAMRSSPI 45
A +SP+
Sbjct: 835 HAFPTSPV 842
>AE014134-2840|AAN10988.1| 281|Drosophila melanogaster CG31803-PA
protein.
Length = 281
Score = 30.3 bits (65), Expect = 2.7
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = -3
Query: 412 VLFSRMRLPPSVSVFYNNIRVPVKSEATFLGVILDSRLTGSPHCYYIS 269
+++ M+L P + N + ++++ F G+ L R+T + + YYI+
Sbjct: 13 LMYCGMKLSPEQRILIENSLIALQNDNRFTGMYLWGRITATKNDYYIA 60
>U14102-1|AAC46495.1| 299|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 299
Score = 29.9 bits (64), Expect = 3.6
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = -3
Query: 352 VPVKSEATFLGVILDSRLTGSPH 284
+ ++S+ ++LGVILDS+LT S H
Sbjct: 6 IKIESKQSYLGVILDSKLTLSSH 28
>BT030123-1|ABN49262.1| 1211|Drosophila melanogaster IP13783p
protein.
Length = 1211
Score = 28.7 bits (61), Expect = 8.3
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = -2
Query: 140 LEPCNAVALHKLDIIQSKALRIIAGAMRSSPINALQVECS 21
+EPC ++ H+LD+++S+A +I + P + ++EC+
Sbjct: 8 IEPCRSIGPHELDVVKSQA--VIKLSPVPVPAHFKRLECN 45
>AE014296-1508|AAF50376.2| 1211|Drosophila melanogaster CG6511-PA
protein.
Length = 1211
Score = 28.7 bits (61), Expect = 8.3
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = -2
Query: 140 LEPCNAVALHKLDIIQSKALRIIAGAMRSSPINALQVECS 21
+EPC ++ H+LD+++S+A +I + P + ++EC+
Sbjct: 8 IEPCRSIGPHELDVVKSQA--VIKLSPVPVPAHFKRLECN 45
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,300,701
Number of Sequences: 53049
Number of extensions: 622703
Number of successful extensions: 1369
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3170136354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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