Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01018
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    39   0.004
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    36   0.038
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    30   1.9  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -2

Query: 707 LSGRMLKVISEDSYQSR-IVWKGLPQGSVLSPLLYNIYSHDLEASLRGKV 561
           LS R  +V    +  SR     G+PQG+VLSPLL+ IY +D+ + L  KV
Sbjct: 54  LSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKV 103


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
 Frame = -2

Query: 245 ILRCLSGVWWGAHPFSLKLLYNALIRSILDYG----TFILEPCNAVALHKLDIIQSKALR 78
           +++ ++G  WG    ++     ALI+    YG    T +L   N   L KL+I    ALR
Sbjct: 666 VIKSMAGTSWGNDRETMLYTTQALIKPTALYGAPAWTSLLSDTN---LEKLEIAYRSALR 722

Query: 77  IIAGAMRSSPINALQVECSEAPL 9
              G  + +P + +  EC   PL
Sbjct: 723 ACVGLTKDTPTDHIYQECRVLPL 745



 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -2

Query: 713 NLLSGRMLKVISEDSYQSR--IVWKGLPQGSVLSPLLYNIYSHDL 585
           N L  R+++  S D++ S+   +  G+PQGSV+SP L+  Y  D+
Sbjct: 508 NYLHKRLIRT-SHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDM 551


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = -2

Query: 704 SGRMLKVISEDSYQSRIVWKGLPQGSVLSPLLYNIYSHDL 585
           S ++ K +S++SY    +  G+PQGSV  PLL+ ++ ++L
Sbjct: 863 SVKINKFVSKNSYP---ISSGVPQGSVSGPLLFILFINNL 899


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,021,989
Number of Sequences: 27780
Number of extensions: 322392
Number of successful extensions: 676
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)