Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01017
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737           33   0.24 
08_02_1247 + 25578291-25578305,25579084-25579197,25579497-255796...    30   2.2  
01_07_0297 - 42583439-42583697,42583763-42583953,42583995-425842...    30   2.2  
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    29   3.9  
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324...    29   3.9  
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348...    28   6.7  
03_06_0680 - 35497868-35497884,35498058-35501961                       28   6.7  
03_05_0777 + 27636342-27637115                                         28   6.7  

>05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737
          Length = 767

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +2

Query: 503 NCMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSEKKE 655
           +C++D NGN  +A ++ +  N  D++  ++  +   +ITK   +LSS  KE
Sbjct: 701 SCIKDFNGNHFDAVLSTALKNMSDIDNCMLFAVQDCQITKPARTLSSLVKE 751


>08_02_1247 +
           25578291-25578305,25579084-25579197,25579497-25579628,
           25579726-25579854,25580024-25580421,25580503-25580602,
           25580734-25580793,25580881-25580967,25581058-25581186,
           25581260-25581559
          Length = 487

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 555 DLVTDASRVLPFVSRIQLRDCIYRRVSLHKNWLP 454
           DLV  A  ++P   + ++R C+ RR+     W+P
Sbjct: 439 DLVEMACEIMPEAQQKEIRQCLRRRIDKCVEWIP 472


>01_07_0297 -
           42583439-42583697,42583763-42583953,42583995-42584201,
           42584291-42584362,42584472-42584507
          Length = 254

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 374 FDPLHYIQREGHLCGSQGEG 433
           ++ +  IQREGHLCG  G G
Sbjct: 182 YEIVRIIQREGHLCGMTGNG 201


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 512 RDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSEKK 652
           RDT  NT +  +++S    +      V N++S++ T L + L+   K
Sbjct: 617 RDTKSNTDKPPISQSSGQIVSFTSNPVFNVISSKPTTLSNGLADTTK 663


>07_01_0426 +
           3239274-3239386,3239472-3239702,3242516-3242642,
           3242729-3242788,3242868-3242960,3243073-3243369,
           3243450-3243761,3243857-3244114,3244227-3244375,
           3244470-3245102,3245367-3245640,3245736-3245777,
           3246332-3246586,3246700-3246711
          Length = 951

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 239 TVDCSLCSGCWCGPLRTAMGLSLSIPSIKTGSNHLRVIIFHTDGYFDPLHY 391
           T+ C  CS          M LSL +PS  T    + V +F TDG  +P+ Y
Sbjct: 417 TLTCPTCSKTSV-TFDPFMYLSLPVPS--TAKRTMTVTVFSTDGSIEPISY 464


>07_01_0460 +
           3486040-3486758,3486804-3486876,3487067-3487132,
           3488090-3488251,3488427-3488457,3488767-3489206
          Length = 496

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 306 YPFPQSRLVLIICVSSYFILMGILTLYTTFKE 401
           YPF    L++ IC S +     ILTLYT +K+
Sbjct: 453 YPFLFDALMMFICFSQFV----ILTLYTNYKQ 480


>03_06_0680 - 35497868-35497884,35498058-35501961
          Length = 1306

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 124 EAAKINKWDGAAAKNAVDDAIREVMTG 204
           EAA+  K +   AKN+  DA++EV++G
Sbjct: 246 EAARKEKNENVMAKNSPQDALKEVLSG 272


>03_05_0777 + 27636342-27637115
          Length = 257

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 118 TAEAAKINKWDGAAAKNAVDDAIREVMTGDLKCKESFAL 234
           TAEAA++ +W   A  + VD A R  +  D++ + ++ L
Sbjct: 130 TAEAAELERWRRHAMASLVDAAKRAAVMKDMEIERAWGL 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,264,166
Number of Sequences: 37544
Number of extensions: 370470
Number of successful extensions: 807
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)