Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01017
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical ...    75   7e-14
AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine re...    30   1.5  
U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical pr...    28   7.9  
L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protei...    28   7.9  
L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protei...    28   7.9  
AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell...    28   7.9  

>AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical
           protein Y37D8A.10 protein.
          Length = 180

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 34/69 (49%), Positives = 43/69 (62%)
 Frame = +3

Query: 294 WDYLYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVAKEKVGNNTRVWEASSYV 473
           +DY  PFP+S++VL +C  SYFI MGIL +Y  + EK     A E  G  +R W  SS +
Sbjct: 62  YDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSSEI 121

Query: 474 KKHDDKYNL 500
           K HDDKY L
Sbjct: 122 KAHDDKYTL 130



 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 118 TAEAAKI-NKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGR 246
           T E  K+ NKWDG   KNA+D+ +++++   +   ES  L++ R
Sbjct: 2   TDEPVKVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLR 45



 Score = 31.1 bits (67), Expect = 0.85
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 524 GNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSL 637
           G + +  +TKS   +ID +G ++  +V  E+  LY+ L
Sbjct: 138 GRSGQGKITKSIGAYIDNDGEIIVPLVKKEVDDLYNRL 175


>AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine
           receptor, class x protein13 protein.
          Length = 319

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -2

Query: 566 SWQTTWSRMPHECCHSCLAYNYEIVFIVVFLYIRTGFPDPGVISNLLLGYHKDALLFECS 387
           SW  TW+  P EC H    Y      + +F+          +++ +LL +H+    F  S
Sbjct: 175 SW--TWNFAPTECGHVISTYTDYYTSVAIFI----AMSSVDIMTLILLIFHRKHTSFASS 228

Query: 386 VEGQNTHQYEI 354
            E Q   + EI
Sbjct: 229 EESQRRRKVEI 239


>U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical
           protein R57.2 protein.
          Length = 216

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = +2

Query: 452 LGSQFLCKETRR*IQSRNCMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYH 631
           L S   C    R   +R C  D + N  +  V        D +GT +  I   ++T LY+
Sbjct: 144 LSSILYCASQNR--DNRKCCLDLDLNAPQLQVGSRCLRMCDPSGTSIDRITKEDVTCLYN 201


>L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 359 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLC 472
           H   Y+DP    Q   +   SQG G   +  LG Q LC
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLC 103


>L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 359 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLC 472
           H   Y+DP    Q   +   SQG G   +  LG Q LC
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLC 103


>AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell
           lineage protein 39 protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 359 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLC 472
           H   Y+DP    Q   +   SQG G   +  LG Q LC
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLC 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,890,907
Number of Sequences: 27780
Number of extensions: 324383
Number of successful extensions: 838
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)