Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS01013
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733 35 0.073
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 32 0.39
01_06_1677 + 39092268-39092306,39092395-39092447,39094259-390943... 32 0.51
07_01_0064 + 463358-464341 31 0.90
05_05_0319 - 24080914-24080929,24082320-24082621,24082666-240827... 31 1.2
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 30 2.1
01_05_0693 - 24339917-24340524,24340778-24341252 30 2.1
05_01_0064 + 454786-455646,456537-456752 29 2.7
07_01_0058 + 438157-438660 29 3.6
06_03_0575 + 22431744-22432212,22432473-22433077 29 3.6
01_07_0339 + 42848065-42848943,42849308-42849526 29 3.6
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 29 4.8
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 29 4.8
04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016 29 4.8
12_01_1026 - 10525744-10526018,10528104-10528332 28 6.3
02_05_0514 + 29686263-29686728,29687078-29687313,29687435-296875... 28 8.4
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 28 8.4
>07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733
Length = 194
Score = 34.7 bits (76), Expect = 0.073
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -1
Query: 410 VVMASSADTDPPRHYDLNQA--KELFESFVKEHNREYKDDADRELHYQSFKKNLQ 252
+V A +ADTD + +++ K FE ++KEH R Y ++ Y++FKK ++
Sbjct: 43 IVDADAADTDEDGNNAVDEPAMKAKFEDWMKEHGRIYITKKEKAHRYENFKKAMK 97
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -3
Query: 225 PYTTFGINKFA---DYTPEEQQSRLGLRLPAKKT*VLRLQSIGMLFQTK*MYCDC 70
P T G ++FA D TPE+ G+ P + +RLQ + F+T+ DC
Sbjct: 102 PNATAGASRFALAGDQTPEDSPVIAGVASPKHQAAAVRLQKVYKSFRTRRQLADC 156
>01_06_1677 +
39092268-39092306,39092395-39092447,39094259-39094350,
39094435-39094646,39095196-39095207
Length = 135
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 365 DLNQA-KELFESFVKEHNREYKDDADRELHYQSFKKNLQ 252
D QA K F+ ++ + NR YKD+A++ ++ FK +Q
Sbjct: 85 DEEQALKVRFQEWMNKFNRNYKDEAEKAYRFEVFKSTVQ 123
>07_01_0064 + 463358-464341
Length = 327
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -1
Query: 419 IATVVMASSADTDPPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNL 255
+A V MAS A T RH + ++ EH R YKD A++ ++ FK N+
Sbjct: 1 MAKVTMASRAGTMEARH----------DKWMAEHGRTYKDAAEKARRFRVFKANV 45
>05_05_0319 -
24080914-24080929,24082320-24082621,24082666-24082787,
24083189-24083534
Length = 261
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 350 KELFESFVKEHNREYKDDADRELHYQSFKKNLQR 249
K F+ ++KEHNR Y + ++ Y+ FK+ R
Sbjct: 183 KARFQDWMKEHNRSYSTEEEKARCYEIFKETAIR 216
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -1
Query: 467 LLIHCAKMNFVSVALLIATVVMASSADTDPPRH-YDLNQAK--ELFESFVKEHNREY 306
L+IHC +MN+V + V + P H Y L++ K E ++ E + Y
Sbjct: 410 LIIHCGRMNYVEAEAMKKPVAYLNPCRISKPNHTYTLDEKKLPEHIKAMTPEERKAY 466
>01_05_0693 - 24339917-24340524,24340778-24341252
Length = 360
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -1
Query: 431 VALLIATVVMASSADTDPPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLQ 252
+ALL+ V A++A D PR A+ E ++ R Y D A++ + F N +
Sbjct: 15 LALLVVAVAAAAAARGDQPRRGHSMAARH--ERWMARFGRAYADAAEKARRMEVFAANAE 72
Query: 251 R 249
R
Sbjct: 73 R 73
>05_01_0064 + 454786-455646,456537-456752
Length = 358
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -3
Query: 273 IIQEKLAEINQLNEKNPYTTFGINKFADYTPEE-QQSRLGLRLPAKKT 133
+ ++ L I+ +N+K G+N+FAD T +E + + LGL P ++
Sbjct: 74 VFKDNLNHIDDINKKVTSYWLGLNEFADLTHDEFKATYLGLTPPPTRS 121
>07_01_0058 + 438157-438660
Length = 167
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 338 ESFVKEHNREYKDDADRELHYQSFKKNLQ 252
+ ++ + NREYKD+A++ ++ FK ++
Sbjct: 86 QEWMNKFNREYKDEAEKAYRFEIFKSTVR 114
>06_03_0575 + 22431744-22432212,22432473-22433077
Length = 357
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 365 DLNQAKELFESFVKEHNREYKDDADRELHYQSFKKN 258
D + +E +E + +H R YKD ++ ++ F+ N
Sbjct: 41 DDSAMRERYEKWAADHGRTYKDSLEKARRFEVFRTN 76
>01_07_0339 + 42848065-42848943,42849308-42849526
Length = 365
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = -3
Query: 273 IIQEKLAEINQLNEKNPYTTFGINKFADYTPEE-QQSRLGLRL-PAKK 136
+ ++ L I++ N+K G+N+FAD T +E + + LGL L PA++
Sbjct: 75 VFKDNLNHIDEENKKITGYWLGLNEFADLTHDEFKAAYLGLTLTPARR 122
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 488 GTSKPV-PLLIHCAKMNFVSVALLIATVVMASSADTDPPRHYDLNQAKELFESFVKEHNR 312
G PV + + C K N S L VV SA +P Y+L +LF SF +H+R
Sbjct: 597 GLGTPVISVQVDCPKSNH-SPEALTRVVVQEFSAIYEPVFIYNLMHIYDLFSSFQFQHDR 655
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 146 LLRRHKFSDFSLSECYSKRNKCIVTACKMFKIYRI 42
L R + +DFS+ C S N VT K K Y +
Sbjct: 716 LAREKEINDFSIKRCISVLNSMDVTKAKKVKAYTV 750
>04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016
Length = 336
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -1
Query: 338 ESFVKEHNREYKDDADRELHYQSFKKNL 255
E ++ ++ R YKDDA++ ++ FK N+
Sbjct: 38 ERWMAQYGRMYKDDAEKARRFEVFKANV 65
>12_01_1026 - 10525744-10526018,10528104-10528332
Length = 167
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 267 QEKLAEINQLNEKNPYTTFGINKFADYTPEEQ 172
+++ +I + N+ T+G+N F D TP+EQ
Sbjct: 124 KDRAHKIIEFNKSGKSYTWGLNIFGDMTPQEQ 155
>02_05_0514 +
29686263-29686728,29687078-29687313,29687435-29687575,
29687685-29687915
Length = 357
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 273 IIQEKLAEINQLNEKNPYTTFGINKFADYTPEE-QQSRLGLR 151
I + L I + N +N G+N FAD EE + S LGL+
Sbjct: 69 IFKRNLRHIVETNRRNGSYWLGLNHFADIAHEEFKASYLGLK 110
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 294 RQRAALSIIQEKLAEINQLNEKNPYTTFGINKFADYTPEEQQS 166
RQ ++ ++Q L+ N E P +T D PE QQS
Sbjct: 1791 RQSISVPLVQSSLSSQNPPAEAEPASTLSRETARDVQPERQQS 1833
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,081,781
Number of Sequences: 37544
Number of extensions: 284325
Number of successful extensions: 674
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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