Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01010X
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0378 - 43167805-43169152,43169258-43169326,43169473-431695...    27   6.8  
06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489     27   9.0  

>01_07_0378 -
          43167805-43169152,43169258-43169326,43169473-43169544,
          43169677-43169745,43169979-43171161,43171239-43171365
          Length = 955

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 77 CICILRTRTFLF*YCYFYFNIYS 9
          C C+LR R  LF + +F+F  ++
Sbjct: 5  CCCLLRARRLLFFFFFFFFFFFA 27


>06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489
          Length = 282

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 223 AVDLLVPVEVYYAQISNYEILCYYHDDLLAVEA 125
           A+ ++V VE   A I  +E  C+++DD LA+E+
Sbjct: 166 AIQMVVTVEKPEASILEFE--CHFNDDELAIES 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,690,381
Number of Sequences: 37544
Number of extensions: 74181
Number of successful extensions: 171
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)