Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01008
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    92   2e-20
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    85   2e-18
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    26   1.3  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   3.8  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   3.8  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    24   6.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   6.7  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    23   8.8  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    23   8.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   8.8  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    23   8.8  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 91.9 bits (218), Expect = 2e-20
 Identities = 44/65 (67%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
 Frame = +1

Query: 64  MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 240
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 241 LPPGL 255
           LPP L
Sbjct: 61  LPPDL 65


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 85.4 bits (202), Expect = 2e-18
 Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
 Frame = +1

Query: 64  MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 240
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 241 LPPGL 255
           LPP L
Sbjct: 61  LPPAL 65


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 124 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLP 246
           KS+ + +N P+  K K +      T+VITD+E  ++  +KQ +P
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVP 243


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 47  NYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 172
           N   ST + +  ++K+F  R   +TP ++K R +L+ S   F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 147 VLLYFDRFGVFPPRLN*KVFDIFD 76
           VLLY  RF V  P+L   +F  FD
Sbjct: 98  VLLYGPRFSVLSPKLYGGIFITFD 121


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 171 NLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHV 61
           N+   + R L    +F VF   L+   FD+ D+ +HV
Sbjct: 14  NITFTLCRGLNLQPKFAVFRVPLHVNKFDVRDYLQHV 50


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 79  KDIKDFLIKARRKDAKSVKIKKNPEN 156
           K I+D+L K    ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 70  REIKDIKDFLIKARRKD 120
           R IKD+KD   KA  KD
Sbjct: 300 RSIKDLKDLYEKANSKD 316


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 214 EKAEKLKQSLPPGLKLKK*SDVTRLM 291
           ++ EK   S P  L++KK + VTRL+
Sbjct: 176 DQTEKFAASHPDRLQIKKNARVTRLL 201


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 236  CLSFSAF--SLSVMTRVYRNLEHRTLNLTFSGF 144
            C+ F +     ++ TR++ +L  +TL  T SGF
Sbjct: 988  CIGFKSAMPEYTLRTRIWASLRSQTLYRTISGF 1020


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +1

Query: 67  PREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 246
           P  +K   D + ++ R      +IK    + + +V+  +   T   +DKE+AEK++  + 
Sbjct: 167 PANLKKRFDEIFESLRYAKALDQIKGLKRDQETQVKVDQATLTHYRSDKERAEKIELRVH 226

Query: 247 PGLK 258
             LK
Sbjct: 227 ESLK 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,033,495
Number of Sequences: 5004
Number of extensions: 17524
Number of successful extensions: 54
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)