Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01008
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     99   4e-22
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     98   1e-21
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    96   5e-21
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123...    27   3.5  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score =   99 bits (238), Expect = 4e-22
 Identities = 44/68 (64%), Positives = 59/68 (86%)
 Frame = +1

Query: 64  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 243
           MP++I +IKDFL+ ARRKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60

Query: 244 PPGLKLKK 267
           PPGL +++
Sbjct: 61  PPGLTVQE 68


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 43/68 (63%), Positives = 58/68 (85%)
 Frame = +1

Query: 64  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 243
           MP++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 244 PPGLKLKK 267
           PPGL +++
Sbjct: 61  PPGLTVQE 68


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 96.3 bits (229), Expect = 5e-21
 Identities = 42/67 (62%), Positives = 57/67 (85%)
 Frame = +1

Query: 67  PREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 246
           P++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSLP
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91

Query: 247 PGLKLKK 267
           PGL +++
Sbjct: 92  PGLTVQE 98


>05_01_0178 -
           1235546-1235756,1235869-1235945,1236194-1236347,
           1237067-1237216,1237363-1237484,1237806-1237910,
           1237986-1238213
          Length = 348

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 64  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQ-- 237
           MP +   +   L+  + +   +V ++    N + +V C ++L+  +I++K  AE      
Sbjct: 170 MPPDGISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAENFFSYF 229

Query: 238 SLPPGLKL 261
            L PG  L
Sbjct: 230 DLDPGYLL 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,277,500
Number of Sequences: 37544
Number of extensions: 98230
Number of successful extensions: 257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)