Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01007
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    26   3.9  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    26   5.1  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   5.1  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   6.8  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   9.0  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   9.0  

>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 187 IKADCASLPFIPTRLGSVKEVSARI*EPRVSWSERG 294
           + AD A +  +  + G  KEV+ RI E +V W +RG
Sbjct: 42  LNAD-AHVIVVSPKAGLCKEVAWRIQEKQVEWRDRG 76


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 76  YFVLRLSRTLCGGVCIWTQLE---MLSGKVFVCIVLVTVWIKADCASLPFIPTRLGSVKE 246
           Y+ LRL R   G   ++  L+     S K+F C V+ T W+  +   LP    R  S + 
Sbjct: 264 YWQLRLER---GYTQVYADLQNRLCTSSKLFGCPVVCTNWLLNNKQHLPIQCKRFRSERR 320

Query: 247 VSAR 258
            +AR
Sbjct: 321 ANAR 324


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 164 QTKTFPLNISN*VQIQTPPHSVRDS 90
           Q  +FPL   N  Q + P HS+RD+
Sbjct: 501 QPHSFPLRKQNVAQSEFPKHSLRDN 525


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -3

Query: 424 ETASSSHRVANVLRVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGA 266
           +  SS+   A   R    +   +  +   +  PA S  G+P+R  A  +SP +
Sbjct: 139 QVPSSAASGARTQRTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAPAASPAS 191


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -2

Query: 323 TQRRWHPLADPRSDQLTRGSHIRALTSLTLPNLVGMNGRLAQSAFIH 183
           + + W+ L+D       R SH  + + LTL  + G  G+ A  + ++
Sbjct: 327 SSKHWYKLSDLPFTPSPRSSHTLSCSGLTLVLIGGKQGKGASDSNVY 373


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 199  SRLLSIQSLKLYKQKPFRLTFPTESKYRHHR--TAYEIVLIRNTNVARLSNYQNARIVVF 26
            S +  +Q+    K KP  L   TES+ + +R     E++ ++  + ARL   + + ++  
Sbjct: 1125 SAIAELQAKSSIKSKPLTLKTATESEIKGYRDQIQLEVLNLKPDSEARLQAIERSELLQK 1184

Query: 25   RR 20
            +R
Sbjct: 1185 KR 1186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,788
Number of Sequences: 5004
Number of extensions: 57687
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)