Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01006X
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    29   0.65 
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    27   2.6  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.5  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    26   4.6  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   4.6  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    26   4.6  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    25   8.1  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 359 EKIERHIMKSVPGGHNLFVQDKEVASLIENLYSKLKLVLVRKDEQKSAALELI 517
           +KIERHI  S+     L + D     ++E+L++ L  V+    + +   L++I
Sbjct: 67  KKIERHIYISLNSIQLLAINDALSPDILESLFNSLNAVIQLGQDSQLRVLQII 119


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 494 SVHLCEPAPASVLNTGSRLETRPPCPARI 408
           + H+CE A   V+N   RL    P PA I
Sbjct: 123 ATHMCEQAKCVVVNVDYRLAPEDPFPACI 151


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +1

Query: 169 EDERAPVCSVRNTSWTYICWL-SSRQSV*SDNSGHAEAAPRFPHQLRSDTPAHTDR*WAG 345
           +DE   V S  NT+ TYI  + SSR S  S +SG A +        R+D+ A T +    
Sbjct: 126 DDEDELVISTSNTAPTYISMIESSRAS--STHSGTAPSIMGMSIHSRADSRAETTQ---S 180

Query: 346 DT*ERKDRTSHHEVRA 393
           D  E +  +  H++++
Sbjct: 181 DGFESRSGSPTHDIQS 196


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 461 VLNTGSR-LETRPPCPARIGCVPLARTS*CDVRSFRSQVSPAH 336
           VLN G R LET PP P+     P+A  +    R+  SQ  P H
Sbjct: 258 VLNIGDRSLETPPPIPSPRPPQPVAVEAIQQSRAVISQQLPLH 300


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +2

Query: 275 KPPPDFRTNFEATHPPILIDNGLAILENEKIERHIMKSVPGGHNLFVQDKEVASL 439
           + PP +         PI++D+G+  +E+  I  H+++    G +    +++VA L
Sbjct: 37  RAPPAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKY--GPSFKPSEEDVAEL 89


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 413 VQDKEVASLIENLYSKLKLVLVRKDEQKSAALELISDASMDF 538
           VQ +   SLI+   ++L+L LV ++  +    ELI   S  F
Sbjct: 842 VQGESTTSLIKTEIAELELSLVNEEHNRKKLTELIEIESAKF 883


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 365 SFRSQVSPAHYRSVWAGVSLRSWCGNLGAASACPLLSLQTDCL 237
           +F   +  +HY +   G  LR W  ++    A P +SL  D L
Sbjct: 317 TFLLSLKKSHYNAKPYGKPLRRWLEDIQVQQAGPSVSLPNDLL 359


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +1

Query: 331 R*WA--GDT*ERKDRTSHHEVRAR--GTQPIRAGQGGRVSNREPVFKTEAG 471
           R WA  G T E+K+  SHHEV  R  G  P R   G +VS     F  + G
Sbjct: 129 RKWAPEGVTVEKKNCLSHHEVLTRLDGYDPER---GVKVSGHRGYFLRQYG 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,739
Number of Sequences: 5004
Number of extensions: 49289
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)