Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01006X
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0559 + 22148773-22149210,22149478-22149684,22150065-221504...    31   0.67 
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458     28   4.7  
09_03_0110 + 12432562-12432801,12432811-12433419                       28   4.7  
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833...    28   6.2  
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014...    28   6.2  
01_06_0202 + 27483503-27483543,27484567-27485311                       28   6.2  
06_03_0455 + 20978658-20978677,20979104-20979608                       27   8.2  
06_03_0381 - 20106714-20107088,20107177-20107594,20107721-201079...    27   8.2  

>06_03_0559 +
           22148773-22149210,22149478-22149684,22150065-22150471,
           22150655-22151472,22151564-22151674,22151846-22152015
          Length = 716

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 397 GTQP--IRAGQGGRVSNREPVFKTEAGAGSQR*TEISGVRAHLGRIDGLLERR 549
           GT P  + +G+GGRV  R        G  SQR         +   +DGLL+RR
Sbjct: 111 GTFPDGLSSGRGGRVRQRSSSATAAPGRRSQRSNTAMSGEGYQAIVDGLLDRR 163


>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
          Length = 619

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 406 VVSPWHGLHDVTFDL--FVLKYRQPIIDQYGRVCRFEVGAEIWGRLLHVH 263
           + S +   HDV   L  +       +I + G+ C +E+ AE+WG L+ VH
Sbjct: 506 LTSKFQKAHDVANFLSEYCALLANALIKKEGQACLWEILAEVWGHLI-VH 554


>09_03_0110 + 12432562-12432801,12432811-12433419
          Length = 282

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = -3

Query: 175 RLPSIVDAFIIS--SIS-GTSPLAVPFSAISSDIVI 77
           R+PS+   ++++   IS G +PLA+P SA SS +VI
Sbjct: 124 RIPSVPTFYVVALTGISVGGAPLAIPPSAFSSGMVI 159


>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
            29283735-29283917,29284362-29284467,29284627-29284651,
            29284736-29284855,29284920-29284997,29285646-29285774,
            29285976-29285989,29286168-29287944,29288344-29288489,
            29288921-29291029
          Length = 1747

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -3

Query: 391  HGL-HDVTFDLFVLKYRQPIIDQYGRVCRFEVGAEIWGRL--LHVHCCH 254
            HG+ H + F    +  +  +ID YG+ C F+    I+  +  + + CC+
Sbjct: 1020 HGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCN 1068


>03_02_0712 -
           10600147-10600196,10600257-10600378,10600993-10601489,
           10601663-10601851,10601936-10602099,10602193-10602446,
           10602535-10602691,10602830-10602995,10603121-10603227,
           10603305-10603478,10603594-10603689,10603781-10603862,
           10603948-10604058,10604253-10604309,10604638-10604709,
           10604799-10605041,10605195-10605341,10605381-10605616,
           10605745-10605865
          Length = 1014

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 54  LLNSSVS*ITMSDEIAENGTANGDVPEIELIIKASTID 167
           + N  V  + ++DEI  N     +VP+  L+  AST+D
Sbjct: 525 IYNEQVRDLLVNDEIRNNSQNGLNVPDASLVCVASTMD 562


>01_06_0202 + 27483503-27483543,27484567-27485311
          Length = 261

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = +1

Query: 412 RAGQGGRVSNREPVFKTEAGAGSQR*TEISGVRAHLGRIDGLLERRETR 558
           R+G GGR   R  V +  AG G     E  G     GR  G L RR  R
Sbjct: 208 RSGSGGRGRGRRRVVRCTAGGGVTTGDEAGG-----GRQGGALRRRRLR 251


>06_03_0455 + 20978658-20978677,20979104-20979608
          Length = 174

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = +1

Query: 367 RTSHHEVRARGTQPIRAGQGGRVSNREP-VFKTEAGAGSQR*TEISGVRAHLG 522
           R +  E R       R   GGR   R   V   EA A  +R  E  GVR H G
Sbjct: 54  RAAGAEPRPEAGAKARPAVGGRRGRRRRRVVGAEAAADGRRGAEAGGVRKHAG 106


>06_03_0381 -
           20106714-20107088,20107177-20107594,20107721-20107970,
           20108109-20108169,20108346-20108422,20108557-20109007
          Length = 543

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 376 HHEVRARGTQPIRAGQGGRVSNREPVFKTEAGAGS 480
           HH +R RG     AG G   ++ +PV  +EA  GS
Sbjct: 385 HHHLRWRGGA---AGSGNTTASSDPVVASEAALGS 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,573,849
Number of Sequences: 37544
Number of extensions: 360878
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)