Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01006X
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   1.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 320 PILIDNGLAILENEKIERHIMKSVP 394
           PI +D+G+ IL++ K E   + S+P
Sbjct: 341 PIQLDDGIDILDDVKCEDERVISIP 365


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 308 LRSWCGNLGAASACPLLSLQTDCLELSQQI 219
           +++W   LG AS+   L +   CLE + +I
Sbjct: 351 MQAWMTALGTASSAATLPITFRCLEENNKI 380


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 561 EPGLPAF*KSIDASEMSSNAADFCSSLR 478
           +PG  A  ++++AS   S ++ F SSLR
Sbjct: 22  QPGSNALSRNVEASGQRSVSSGFRSSLR 49


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 233 AQDNQFEVTTVDMQKPPPDFRTNFEATHPPILIDNG 340
           AQD    +  V    P P++R   +    P+L+ +G
Sbjct: 250 AQDESTSLVCVAQACPTPEYRWYAQTGSEPMLVLSG 285


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 233 AQDNQFEVTTVDMQKPPPDFRTNFEATHPPILIDNG 340
           AQD    +  V    P P++R   +    P+L+ +G
Sbjct: 250 AQDESTSLVCVAQACPTPEYRWYAQTGSEPMLVLSG 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,137
Number of Sequences: 438
Number of extensions: 3362
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)