Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01005
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   0.85 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   2.0  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   2.6  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   2.6  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   4.5  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   6.0  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   6.0  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    24   7.9  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    24   7.9  
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    24   7.9  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    24   7.9  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    24   7.9  

>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 188 HPPLASPFRAFWPMIRLTPPLPQHHSRW 271
           HPPL +P       +   PP+PQ  S W
Sbjct: 138 HPPLHNPLPVSCQPVLRPPPVPQVPSHW 165


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +1

Query: 235 THTTASATSLKVESDSLSSISV*RANAKTSLITMSTSTF 351
           T +T+S+ S    S S SS S   +++ + + TMS+STF
Sbjct: 211 TSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTF 249


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 17/69 (24%), Positives = 27/69 (39%)
 Frame = +1

Query: 64  CGHLFVGTNINRPMVYHHNAKYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHT 243
           C  +F       P   + N KY SK   KR  + HY  P+      K    +       +
Sbjct: 279 CKDIFPSLANENPHSDNPNLKYSSKTLSKRDTSSHY--PETLKASSKHSSPVKGNSSISS 336

Query: 244 TASATSLKV 270
           T + ++LK+
Sbjct: 337 TWTPSNLKI 345


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 74  YSSVPISIDLWSTITTLSTTPSYSAKGLRTFITFYPRCHPPLASPFRA 217
           Y+   ++  +WS  +   +TP  SA     F T YP      +S + A
Sbjct: 116 YTMDNVTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPA 163


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 199 GKSIQGILAYDKTHTTASATSLKVESDSLSSISV 300
           GKS+  ILAYD   T  +     V  D+ +S +V
Sbjct: 371 GKSLASILAYDDNPTEPTMQQNLVSDDTNASTAV 404


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +1

Query: 100 PMVYHHNAKYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHTTASATSLKVE 273
           P+V  H   +DSK   + ++N+      V   I   +      +   T+A AT   VE
Sbjct: 66  PVVNKHEDSFDSKTDEEYLQNVSTTTEDVSMLINTPVTEKYEQEHRDTSAQATPSIVE 123


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 45  RCGDRRMRSPIRRYQYQ*TYGLPSQR 122
           +C  RR  S    Y Y+ TYG P +R
Sbjct: 25  KCDQRRPCSNCIAYNYECTYGQPFKR 50


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 266 RWNRIHFRQSPYEERTRKQA*LRCLHLR 349
           RW++I + +  Y  +TR +A +R   LR
Sbjct: 71  RWDKITYHRFAYLAKTRPEAGIRFADLR 98


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 88  NINRPMVYHHNAKYDSKLFRKRVENLHYVL 177
           +I+  + YHHN K +S+  R +  +  YVL
Sbjct: 200 SISHQLNYHHNVKLNSQALRNK--SADYVL 227


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 246 RFRNITQGGIGFTFVNLRMKSERE 317
           R   + +G +GF F N  +K  RE
Sbjct: 75  RLLPVVRGNVGFVFTNADLKEVRE 98


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 62  NAVTYSSVPISIDLWSTITTLSTTPSYSAKGLRT 163
           ++V+  SVP S  LW T ++L   P Y+   + T
Sbjct: 365 HSVSSISVPKSSSLWLTKSSLINPPYYAKINVET 398


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +1

Query: 115 HNAK---YDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHTTASATSLKV 270
           H AK   + ++ + K +E   Y++ QVP  + K    I+      T AS  S  V
Sbjct: 8   HQAKQQPHHTEPYIKALEAREYIIEQVPEELSKPKVAIICGSGLGTLASGLSAPV 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,918
Number of Sequences: 5004
Number of extensions: 30289
Number of successful extensions: 95
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)