Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01003
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    71   1e-13
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.7  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   2.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.3  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    27   3.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.1  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    25   9.1  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 34/75 (45%), Positives = 52/75 (69%)
 Frame = +2

Query: 266 KKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 445
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P VYK+  ++ YIV G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 446 QATMAAAERFKAPET 490
           QA      + +A ET
Sbjct: 84  QARAFNESQKQATET 98


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 609 HYYLHVLLIDSSLVYTFFVFFFCYW 535
           HYYL  ++I  SLV  F  F   YW
Sbjct: 109 HYYLSAMIIGWSLVTIFTCFVRHYW 133


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 54  QQYIKMPELTELDKATASMTEKRKEE 131
           ++YIK  +LTELD     +T+ RK +
Sbjct: 205 KEYIKKCQLTELDPTQQLLTQSRKNQ 230


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 627 RDVRLGHYYLHVLLIDSSLVYTFFVFFFCYWCYR 526
           R ++L +++ H   I++   + FF FFF   C R
Sbjct: 57  RRLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRR 90


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 546 FCYWCYRCSSCGRSLPVAVVSGALNLSAAAMVACVDKS 433
           FC + +    CG   P AV++    L AA + +C++ S
Sbjct: 97  FCRYTFYKHFCGGETPQAVMATMDTLQAAGITSCLNYS 134


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query: 287  SKLGLK--PVQG--VERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 445
            +KL LK  PV+G  VER  +    +I   +   D+Y  P  DT +V      ED S+
Sbjct: 976  TKLDLKFSPVEGIMVERTAVNNFVDIGVSVAPKDLYGYPLYDTEVVSLAFNKEDASS 1032


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 361 DKENVL*FSDCHSLYSLYWFETEFTH--YLSGLLLTTSC 251
           D+ ++  F D H+L +L W  T  T   ++S + L T C
Sbjct: 321 DEASLFEFQDKHNLLTLGWIHTHPTQTCFMSSVDLHTHC 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,306
Number of Sequences: 5004
Number of extensions: 43709
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)