Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01003
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098          107   7e-24
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...    99   3e-21
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825...    31   0.58 
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438...    28   7.1  
06_03_0453 + 20953268-20953337,20953364-20953500                       27   9.4  
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111...    27   9.4  

>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
          Length = 221

 Score =  107 bits (257), Expect = 7e-24
 Identities = 46/75 (61%), Positives = 64/75 (85%)
 Frame = +2

Query: 254 ARGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIE 433
           +R EKK+RK M KLG+KPV GV R+TI+++KNILFV++ PDV+K+P S+TY++FGEAKIE
Sbjct: 78  SRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEAKIE 137

Query: 434 DLSTQATMAAAERFK 478
           DLS+Q    AA++F+
Sbjct: 138 DLSSQLQAQAAQQFR 152


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 53/97 (54%), Positives = 67/97 (69%), Gaps = 19/97 (19%)
 Frame = +2

Query: 254 ARGEKKARKIMSKLGLKPVQGVERVTIRKSKN-------------------ILFVINSPD 376
           +R EKK+RK M KLG+K + GV RVTI+KSKN                   ILFVI+ PD
Sbjct: 61  SRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLHYQILFVISKPD 120

Query: 377 VYKNPHSDTYIVFGEAKIEDLSTQATMAAAERFKAPE 487
           V+K+P+SDTY++FGEAKIEDLS+Q    AAE+FKAP+
Sbjct: 121 VFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFKAPD 157


>08_02_0516 +
           18080706-18080760,18081796-18081885,18082479-18082573,
           18083658-18083726,18083812-18084393
          Length = 296

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 396 QTPTSFSVKPRLKICPHRPPWLQLRDSRHQKPQPLA 503
           Q P    ++ +L   P +PP LQ +   HQ+PQP A
Sbjct: 244 QQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQPQPQA 279



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 396 QTPTSFSVKPRLKICPHRPPWLQLRDSRHQKPQ 494
           Q P     + +L   P +PP LQL+   H +PQ
Sbjct: 228 QLPQQLQPQSQLPPQPQQPPQLQLQSQLHPQPQ 260


>02_05_1298 -
           35542250-35542831,35543218-35543410,35543511-35543827,
           35544144-35544186,35545845-35545900,35546028-35546102,
           35546249-35546345,35546422-35546546,35547063-35547167,
           35547295-35547432,35547758-35547831,35547995-35548065,
           35548168-35548363,35548482-35548572,35549264-35549342,
           35549431-35549491,35549745-35549814,35549913-35549987,
           35550119-35550194,35550403-35550489,35550744-35550880,
           35551000-35551063,35551351-35551415
          Length = 958

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 153 SHCQMMQSLLCASRS*RRWPCQVQSVLAS 67
           S C  +QSL+ ++   +RWP  V S LAS
Sbjct: 422 SLCSSLQSLILSNNKIKRWPGTVFSSLAS 450


>06_03_0453 + 20953268-20953337,20953364-20953500
          Length = 68

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 636 FRSRDVRLGHYYLHVLLIDSSLVY---TFFVFFFCYWCY 529
           +R R+ ++ + YLHV L+   LVY   T    ++  WCY
Sbjct: 14  WRCRNDKVFNGYLHVFLLAPLLVYNATTGGAGYYAQWCY 52


>03_01_0141 +
           1116833-1117082,1117658-1118574,1119417-1119579,
           1119668-1120497,1120562-1120570
          Length = 722

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 473 ISQLQPWWPVWTNLQSWLHRK 411
           I QL PW P  T   SWL  K
Sbjct: 110 IKQLHPWIPSTTGRSSWLEEK 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,073,236
Number of Sequences: 37544
Number of extensions: 291432
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)