Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01003
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 344 KNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERFKAPETTATGNDLPQLE 523
           K I+   +S  +++ P++   I++   KIE  +    +   E+F     T   N L   E
Sbjct: 423 KRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQF----DTTINNGLLLEE 478

Query: 524 QR 529
           QR
Sbjct: 479 QR 480


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 344 KNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERFKAPETTATGNDLPQLE 523
           K I+   +S  +++ P++   I++   KIE  +    +   E+F     T   N L   E
Sbjct: 423 KRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQF----DTTINNGLLLEE 478

Query: 524 QR 529
           QR
Sbjct: 479 QR 480


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 486 SGALNLSAAAMVACVDKSSILASP 415
           SG  +   AA+ A V  SSI++SP
Sbjct: 371 SGKKSKFNAAVAAAVQSSSIVSSP 394


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 534 CYRCSSCGRSL 502
           CY C  CG++L
Sbjct: 371 CYTCDVCGKTL 381


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 199 QVESQTRLLELTSSANRNSSW*EEGQKDNEXXXXXXXXXXXESDN-QKIKEH 351
           +VE+++ ++   +SAN NSS   E  ++ +           +S++ +K KE+
Sbjct: 738 RVENRSAIVHSEASANANSSTSSEESREEKATTSLEAEKREKSEHCEKGKEY 789


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,622
Number of Sequences: 438
Number of extensions: 2696
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)