Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS01001
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0338 + 7426999-7428322,7428390-7428646                           28   4.4  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   5.8  
01_05_0624 + 23772613-23774671,23774737-23775596                       27   5.8  
09_04_0269 + 16265191-16265472,16265574-16266149                       27   7.7  

>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 206 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 66
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 91  RIARREQKLKEHGASSCISGKRGRRC 168
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>01_05_0624 + 23772613-23774671,23774737-23775596
          Length = 972

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 258 GLLPAAIPAELKPSTGAT 205
           G LP  +P ELKPSTG +
Sbjct: 618 GELPHCLPTELKPSTGGS 635


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 203 MESTDPQCHILQHRRPRLPL 144
           M  T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,692,650
Number of Sequences: 37544
Number of extensions: 258742
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)